Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151235g00001 TGGTCGGCTATAGCCACACACTTGCCAAAGAGAACGGACAATGAAATCAAGAACTATTGGAACACTCATCTCAAGAAACGCTTAACCAAAATGGGCATCGATCCGGTCACTCACAAGCCCAAGAACGATGCCCTATTCCCCGGGGGAGATGGCGGCGGTCATTCCAACAAGGCCGCTGCCAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGGCTTGAAGCTGAAGCAAGGTTGGTTAGGGAATCAAAATTACGTTCACAACACCAACAACATTTTCCATCTTCCTCCTCGTCTTCCTCTTCAGCTCAAGTTATGATCAGATTAGTGAACGAGTCTACTATGACCACGACCAAGGATTGGAATAATAACCATGGAGATTGGTTTTTGAGATCTAATAATGAAAGTAATGGTGGTGGTGGTGGAATGGGGAATGGTGAAGAACTTGAGTCACCAACATCAACGTTGTCATTCTCGGAGAACAATAATGCATCAGATCCAGCAATAATTGGAGAAAATAGCAACAACAATGGAGTGGTGGTGCCTATGATTGCTAATTCAGGTTCATATTCTGAGAATCATGAAATTATTAGGAGTATTAATGTGAAGGAAGAAGGTAGCGAAGATCATCATGATAATTGTTCATCAATGGGTCCCTTCAATAATAATCCTAGCTTGCATGAATTGGCAATGATGACAATGGAATCAACGTGGGGAAGTTCTTCTCATAATAATCATGATGATGAGTCTCTTAGGACCAGTGGTAGTAACGGTGCACATGTTAATGATGATGATGGTAATGCTCAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAATTAGGGTTCACAAATCTTCTGCTGAATACTAGTAATAATAATGATGAAGTGAGTTTGTCATCTGAAGGTGGTGATGGTGGAGAGTCTCATAACAATAACAATAATAATGAGAATGGTGATTCATATGAAGATAAGAACTATTGGAACAGCATTCTCCATTTGGTGAATTCTTCACCTTCTCATTCACCAATCTTTTGA 1035 0.4097 WSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALFPGGDGGGHSNKAAANLSHMAQWESARLEAEARLVRESKLRSQHQQHFPSSSSSSSSAQVMIRLVNESTMTTTKDWNNNHGDWFLRSNNESNGGGGGMGNGEELESPTSTLSFSENNNASDPAIIGENSNNNGVVVPMIANSGSYSENHEIIRSINVKEEGSEDHHDNCSSMGPFNNNPSLHELAMMTMESTWGSSSHNNHDDESLRTSGSNGAHVNDDDGNAQEEEEEEKEEELGFTNLLLNTSNNNDEVSLSSEGGDGGESHNNNNNNENGDSYEDKNYWNSILHLVNSSPSHSPIF 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151235g00001 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 168 - -
Stsc151235g00001 344 Gene3D - 1 44 - -
Stsc151235g00001 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 28 IPR017930 -
Stsc151235g00001 344 ProSiteProfiles Myb-like domain profile. 1 24 IPR001005 -
Stsc151235g00001 344 SUPERFAMILY Homeodomain-like 1 33 IPR009057 -
Stsc151235g00001 344 MobiDBLite consensus disorder prediction 84 104 - -
Stsc151235g00001 344 MobiDBLite consensus disorder prediction 129 177 - -
Stsc151235g00001 344 MobiDBLite consensus disorder prediction 89 104 - -
Stsc151235g00001 344 MobiDBLite consensus disorder prediction 214 244 - -
Stsc151235g00001 344 MobiDBLite consensus disorder prediction 283 321 - -
Stsc151235g00001 344 Pfam Myb-like DNA-binding domain 1 24 IPR001005 -
Stsc151235g00001 344 CDD SANT 1 24 IPR001005 -
Stsc151235g00001 344 MobiDBLite consensus disorder prediction 148 177 - -
Stsc151235g00001 344 MobiDBLite consensus disorder prediction 205 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151235g00001 Stsc-Chr151235 1629 2664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151235g00001 1 161 MYB Transcription Factor Family AT3G01140 55.901 1.15e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc151235g00001 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151235g00001 K09422 - gmx:100101835 238.81