Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151233g00008 ATGGATGATGTTATTGCTAGTTTTAGCTACTATGCTGAACTTGCTGAAGGGTTGGATGCAAAGCAAAAGGCACCTGTTTCTCTTCCTATGGAGAACTTCAAGAGTTATGTCATCAAGGAGCCAATTGGTGTTGTTGCCTTGATTACTCCTTGGAACTATCCAATGCTAATGGCATCATGGAAAGTTGCTGCTGCTCTTGCTGCTGGTTGCACTGCAGTATTGAAGCCATCTGAACTGGCATCTGTTACCTGCTTAGAACTGGCTGACATATGCAAAGAAGTAGGTCTTCCAGCAGGGGTGTTAAATGTGATAACTGGATTAGGCACCGAAGCTGGAGCTCCTTTGGCTTCACATCCTCATATAGACAAGATTTCCTTTACTGGAAGCTCTGCAACTGGAAGCAAAATTATGCAAGCTGCAGCTCAGCAAGTGAAGCCTGTTTCACTAGAGCTCGGTGGAAAAAGTCCAATTATTGTCTTTGACGATGTTGACATTGATAAGGTTGCTGAATGGACCATCCTGGGATGTTTCTTTACCAATGGTCAGATATGTAGTGCAACATCTCGGCTTCTCGTCCATGAAAACATAGCAACAAAGTTTTTGAATAGGCTTGTGGAATGGGCTAAAAACATCAAAGTTTCAGATCCCTTGGAAGATGGTTGCAAATTAGGCGCCATTGTTAGCGAAGGTCAGTATCAGAAAGTTCTCAAGTTTATTTCAACTGCTAAGAGTGAGGGTGCAACAATTTTGACCGGAGGGTCTCGCCCTGAGCATTTGAAGAAAGGTTACTTTGTTGAACCAACCATCATAACTGATGTGAGTACCTCAATGCAAATTTGGAGAGAGGAAGTTTTTGGACCTGTGCTCTGTGCCAAAACATTTAGCACTGAGGAAGAAGCTATTGAACTAGCAAATGATACCCACTATGGCTTAGGGTCAGCTGTGATGTCAAATGATCCAGAAAGATGTGAGCGTATATCAAAGGCTATTCAGGCTGGAATTGTATGGATCAATTGCTCTCAACCAACTTTCATTCAAGCCCCATGGGGAGGCATTAAACGTAGCGGGTTCGGTCGCGAATTAGGAGAATGGGGACTTGATAATTTCTTGAGTGTGAAGCAAGTTACAAAATATATTTCTGATGAGCAGTGGGGTTGGTATAAGCGTCCTTCAAAGATGTAA 1182 0.4289 MDDVIASFSYYAELAEGLDAKQKAPVSLPMENFKSYVIKEPIGVVALITPWNYPMLMASWKVAAALAAGCTAVLKPSELASVTCLELADICKEVGLPAGVLNVITGLGTEAGAPLASHPHIDKISFTGSSATGSKIMQAAAQQVKPVSLELGGKSPIIVFDDVDIDKVAEWTILGCFFTNGQICSATSRLLVHENIATKFLNRLVEWAKNIKVSDPLEDGCKLGAIVSEGQYQKVLKFISTAKSEGATILTGGSRPEHLKKGYFVEPTIITDVSTSMQIWREEVFGPVLCAKTFSTEEEAIELANDTHYGLGSAVMSNDPERCERISKAIQAGIVWINCSQPTFIQAPWGGIKRSGFGRELGEWGLDNFLSVKQVTKYISDEQWGWYKRPSKM 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151233g00008 393 CDD ALDH_F10_BADH 1 377 - -
Stsc151233g00008 393 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 157 348 IPR016163 GO:0016620
Stsc151233g00008 393 FunFam Betaine aldehyde dehydrogenase 153 344 - -
Stsc151233g00008 393 PANTHER ALDEHYDE DEHYDROGENASE 1 392 - -
Stsc151233g00008 393 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 1 167 - -
Stsc151233g00008 393 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 149 156 IPR029510 GO:0016491
Stsc151233g00008 393 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 2 373 IPR016162 GO:0016491
Stsc151233g00008 393 Pfam Aldehyde dehydrogenase family 2 375 IPR015590 GO:0016491
Stsc151233g00008 393 SUPERFAMILY ALDH-like 5 381 IPR016161 GO:0016491
Stsc151233g00008 393 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 177 188 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151233g00008 Stsc-Chr151233 37053 42072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151233g00008 1 391 Aldehyde Dehydrogenase Gene Family AT1G74920 79.284 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151233g00008 K00130 - gmx:100170755 701.819