Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151230g00003 ATGGCTTTAAGCAGCTTTGTTGGCGGTAACAACAACCTCTGCGGCACGCCTCTAAACGGTTGCAACTCCGATCTGTCTTCTCGCGGTTTTCCTCCGGCTAAAACCGACGACTCGCGCCGTGCTAAGATAGTCATGATCGTTGCGGCCACCGTGGGAGGCGTTTCTCTTGTTCTAATCTTAGTGATTTTGTATGTTATGAGACGGCCGGGGAGTTACAGCGGTTCCTTGGGAGACACGGAATCTCCCTGCCTCGATTCGGATATCTATTTCCCTCCGAAGGACGGATTTACATTCCAGGATCTTGTTGAAGCAACAAAGAGGTTTCACGAGAGCTACGTGATCGGCCGGGGAGCGTGCGGGACGGTTTACAAGGCGGTTATGAAATCCGGGAAGACCATTGCTGTTAAGAAGCTTGCTTCAAACAGAGAAGGGAACAACATTGAGAACAGTTTTAGAGCTGAGATACTGACACTGGGGAAGATTCGGCATAGAAACATTGTGAAGCTTTATGGATTCTGTTACCACCAAGGCTCAAATCTGTTGCTTTATGAGTACATGGAAAGGGGAAGCTTAGGAGAAGTGCTTCATGGTTCTGCTTCGAATTTGGAGTGGCCAATTCGGTTCATGATTGCTCTTGGTGCTGCTGAGGGTCTTGCTTACTTGCACCATGATTGCAAGCCGAAGATTATTCACCGGGATATAAAGTCTAATAACATTCTTCTTGATGAGAATTTTGAGGCTCATGTTGGTGATTTTGGGTTGGCTAAAGTGATTGACATGCCACAATCAAAATCCATGTCTGCAGTTGCTGGATCTTATGGCTATATTGCTCCTGAATATGCATACACCATGAAGGTAACAGAAAAGTGTGACATTTATAGCTATGGCGTTGTGCTCTTGGAACTTCTAACAGGTAGAGCTCCGGTTCAACCATTGGAGCAAGGTGGTGATCTTGTGACATGGGTTAAAACCCATATAAGGAGCCACAACAACACATTGACACCGGCGATCCTCGACGATCGCGTGGATCTTGAGGAACAAGTAACTGTCAATCACATGCTCACTGTCCTCAAGATTGCTCTGCTTTGCACAAGCATGTCACCTTCGGAGAGGCCTTCCATGCGCGAAGTCGTGTTGATGCTTATCGAGTCGAATGAGCGCGAAGGGAACTTAACGCTCACTCGACCGTACCATGATCTTCCTTCCAAGGATTCCACACATTAG 1224 0.4722 MALSSFVGGNNNLCGTPLNGCNSDLSSRGFPPAKTDDSRRAKIVMIVAATVGGVSLVLILVILYVMRRPGSYSGSLGDTESPCLDSDIYFPPKDGFTFQDLVEATKRFHESYVIGRGACGTVYKAVMKSGKTIAVKKLASNREGNNIENSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGEVLHGSASNLEWPIRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLEQGGDLVTWVKTHIRSHNNTLTPAILDDRVDLEEQVTVNHMLTVLKIALLCTSMSPSERPSMREVVLMLIESNEREGNLTLTRPYHDLPSKDSTH 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151230g00003 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Stsc151230g00003 407 Gene3D Phosphorylase Kinase; domain 1 82 185 - -
Stsc151230g00003 407 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 186 396 - -
Stsc151230g00003 407 ProSiteProfiles Protein kinase domain profile. 108 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151230g00003 407 Gene3D Transferase(Phosphotransferase) domain 1 186 395 - -
Stsc151230g00003 407 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 10 382 - -
Stsc151230g00003 407 SMART serkin_6 108 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151230g00003 407 SUPERFAMILY Protein kinase-like (PK-like) 86 381 IPR011009 -
Stsc151230g00003 407 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 78 185 - -
Stsc151230g00003 407 Pfam Protein kinase domain 109 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151230g00003 Stsc-Chr151230 28609 32756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151230g00003 4 383 Receptor kinase-like Gene Family AT5G65700 45.953 1.94e-96 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc151230g00003 Pkinase 8.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151230g00003 - - gmx:100805792 682.945