Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151229g00002 ATGAATCCAGATCATCATCATGATGCTGGTATAGTAATGAAGGAGGAGTATCTAGGAGAAGGCTCTTCTACTTGTTCCTTTTCATATCCAATGGCGGTGGATGTTCCTCCGCATCCGAGAGAGGGGCTTCATGAGAGTGGTCCACCACCATTCCTGACGAAGACATACGACATAGTTGAAGACCCTTCAACAAATCACATAGTTTCTTGGTCCAAAGGAAACAACAGCTTCGTTGTGTGGGATCCTCAAGCTTTCTCCATTTCACTTCTCCCAAGATTCTTCAAGCACAACAATTTCTCAAGCTTTGTCCGCCAACTCAACACCTATGGTTTTAAAAAGGTAGATCCAGACAGGTGGGAATTTGCTAATGAGATGTTTCTTAGAGGGCAAAGGGTCCTTTTGAAGAACATCAAAAGGAGGAAGACAAATCAAACTCAACAACAAGCTCTACATCAGCAGCAAGGTTTAGACCCTTGTGTTGAGGTTGGAAGGTTTGGATTAGATGGAGAACTCGACCGGCTGCGGCGCGACCGGCAGGTGCTAATGGTGGAGTTGGTGAAGCTGAGACAGCAGCAGCAGACTACAAAGTCTCAAATCCAAGCCATGGAAGCTAAGCTTAGAAGGACTGAGCAGAAACAGCAGCAGATGATGAGCTTCTTGGCAAGGGCAATGCAGAATCCAAACTTTGTTCAGCAATTGGTCCAACAAAAGGAATGGAGAAAGGAATTGGAGGAAGCTTTCTCTAATAAGAGGATGAGGCCTATTGATCAAGGACCTAGTAGTAATAATGTTGAAGTAGATGATGGATTATTAGGTTATGGTGATGAAGATTGCTCAACTTTTGTTAAACTAGAGTCACACACTAATGATTATGATGATGATGATGATGACAAATTTGATTTTGAGTTATCGGAAATGGACCTTATTGGTTTGAATGTTAAGGGACAAAGTGAAGATCATCATCATCATCATGTTCAAGTTGGAGTAAGTAGAGATAATAATAATAATATTGATGAAGTGTTTTGGGAAGATTTGTTGAATGAAGGTATTGAAAATCAAGATGTGCTTGCAGCAGCAGCAGTTGAAGATGTAGATGTTTTGGCTGATCAACTTGGTTTTTTAGCTTCTACTCCTAATAAATAA 1143 0.4112 MNPDHHHDAGIVMKEEYLGEGSSTCSFSYPMAVDVPPHPREGLHESGPPPFLTKTYDIVEDPSTNHIVSWSKGNNSFVVWDPQAFSISLLPRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLRGQRVLLKNIKRRKTNQTQQQALHQQQGLDPCVEVGRFGLDGELDRLRRDRQVLMVELVKLRQQQQTTKSQIQAMEAKLRRTEQKQQQMMSFLARAMQNPNFVQQLVQQKEWRKELEEAFSNKRMRPIDQGPSSNNVEVDDGLLGYGDEDCSTFVKLESHTNDYDDDDDDKFDFELSEMDLIGLNVKGQSEDHHHHHVQVGVSRDNNNNIDEVFWEDLLNEGIENQDVLAAAAVEDVDVLADQLGFLASTPNK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151229g00002 380 ProSitePatterns HSF-type DNA-binding domain signature. 90 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151229g00002 380 FunFam Heat shock transcription factor 1 44 141 - -
Stsc151229g00002 380 Gene3D - 43 142 IPR036388 -
Stsc151229g00002 380 Pfam HSF-type DNA-binding 51 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151229g00002 380 SUPERFAMILY "Winged helix" DNA-binding domain 46 140 IPR036390 -
Stsc151229g00002 380 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 37 262 IPR027725 -
Stsc151229g00002 380 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151229g00002 380 PRINTS Heat shock factor (HSF) domain signature 102 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151229g00002 380 PRINTS Heat shock factor (HSF) domain signature 51 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151229g00002 380 Coils Coil 171 212 - -
Stsc151229g00002 380 SMART hsfneu3 47 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151229g00002 Stsc-Chr151229 10353 12721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151229g00002 37 377 HSF AT3G22830 58.011 2.60e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc151229g00002 HSF_DNA-bind 5.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151229g00002 K09419 - gmx:100811941 455.677