Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151229g00001 ATGAGTGGGGGTGTCCACCTGCTAATTCTAATTCTGCTGCTTCATCCACCCCTCTCTCTCTCTCTCTCTCTCCTTCCTTCTCCTTACATCCATACCATAACATCACTAATAAGTAAAATGAATCCAGATCATCATCATGATGCTGGTATAGTAATGAAGGAGGAGTATCTAGGAGAAGGCTCTTCTACTTGTTCCTTTTCATATCCAATGGCGGTGGATGTTCCTCCGCATCCGAGAGAGGGGCTTCATGAGAGTGGTCCACCACCATTCCTGACGAAGACATACGACATAGTTGAAGACCCTTCAACAAATCACATAGTTTCTTGGTCCAAAGGAAACAACAGCTTCGTTGTGTGGGATCCTCAAGCTTTCTCCATTTCACTTCTCCCAAGATTCTTCAAGCACAACAATTTCTCAAGCTTTGTCCGCCAACTCAACACCTATGGTTTTAAAAAGGTAGATCCAGACAGGTGGGAATTTGCTAATGAGATGTTTCTTAGAGGGCAAAGGGTCCTTTTGAAGAACATCAAAAGGAGGAAGACAAATCAAACTCAACAACAAGCTCTACATCAGCAGCAAGGTTTAGACCCTTGTGTTGAGGTTGGAAGGTTTGGATTAGATGGAGAACTCGACCGGCTGCGGCGCGACCGGCAGGTGCTAATGGTGGAGTTGGTGAAGCTGAGACAGCAGCAGCAGACTACAAAGTCTCAAATCCAAGCCATGGAAGCTAAGCTTAGAAGGACTGAGCAGAAACAGCAGCAGATGATGAGCTTCTTGGCAAGGGCAATGCAGAATCCAAACTTTGTTCAGCAATTGGTCCAACAAAAGGAATGGAGAAAGGAATTGGAGGAAGCTTTCTCTAATAAGAGGATGAGGCCTATTGATCAAGGACCTAGTAGTAATAATGTTGAAGTAGATGATGGATTATTAGGTTATGGTGATGAAGATTGCTCAACTTTTGTTAAACTAGAGTCACACACTAATGATTATGATGATGATGATGATGACAAATTTGATTTTGAGTTATCGGAAATGGACCTTATTGGTTTGAATGTTAAGGGACAAAGTGAAGATCATCATCATCATCATGTTCAAGTTGGAGTAAGTAGAGATAATAATAATAATATTGATGAAGTGTTTTGGGAAGATTTGTTGAATGAAGGTATTGAAAATCAAGATGTGCTTGCAGCAGCAGCAGTTGAAGATGTAGATGTTTTGGCTGATCAACTTGGTTTTTTAGCTTCTACTCCTAATAAATAA 1260 0.4143 MSGGVHLLILILLLHPPLSLSLSLLPSPYIHTITSLISKMNPDHHHDAGIVMKEEYLGEGSSTCSFSYPMAVDVPPHPREGLHESGPPPFLTKTYDIVEDPSTNHIVSWSKGNNSFVVWDPQAFSISLLPRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLRGQRVLLKNIKRRKTNQTQQQALHQQQGLDPCVEVGRFGLDGELDRLRRDRQVLMVELVKLRQQQQTTKSQIQAMEAKLRRTEQKQQQMMSFLARAMQNPNFVQQLVQQKEWRKELEEAFSNKRMRPIDQGPSSNNVEVDDGLLGYGDEDCSTFVKLESHTNDYDDDDDDKFDFELSEMDLIGLNVKGQSEDHHHHHVQVGVSRDNNNNIDEVFWEDLLNEGIENQDVLAAAAVEDVDVLADQLGFLASTPNK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151229g00001 419 Coils Coil 210 251 - -
Stsc151229g00001 419 ProSitePatterns HSF-type DNA-binding domain signature. 129 153 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151229g00001 419 FunFam Heat shock transcription factor 1 83 180 - -
Stsc151229g00001 419 SUPERFAMILY "Winged helix" DNA-binding domain 85 179 IPR036390 -
Stsc151229g00001 419 SMART hsfneu3 86 179 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151229g00001 419 Pfam HSF-type DNA-binding 90 179 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151229g00001 419 PRINTS Heat shock factor (HSF) domain signature 128 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151229g00001 419 PRINTS Heat shock factor (HSF) domain signature 90 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151229g00001 419 PRINTS Heat shock factor (HSF) domain signature 141 153 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151229g00001 419 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 76 301 IPR027725 -
Stsc151229g00001 419 Gene3D - 82 181 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151229g00001 Stsc-Chr151229 10353 12721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151229g00001 76 416 HSF AT3G22830 58.564 1.25e-134 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc151229g00001 HSF_DNA-bind 6.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151229g00001 K09419 - gmx:100811941 455.677