Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151228g00010 ATGAACTCCTTTCATTTCCTCCTCCTACTCTTATTTTTTCCATTGCTTGCACTTCTTATTAGTCCAAAACTAGTTCATGGAAATGCAGAGCTAAGAGCTCTCATGGACCTGAAATCCTCTCTAGACCCAGAAGGCAAGGTTCTTGGTTCATGGACAAGTGATGGTGATCCATGCACTGATTCCTCCTTCTTAGGTGTTGCTTGCAACCAGCACAGAAAAGTGGCCAACATATCACTGGCTGGAAGGGGTCTTTCTGGCATGGTTTCTCCATCAGTGGCTGAACTTAAGTGCTTATCTGGTTTATATCTTCATTACAACATCATTTCCGGGGAGATACCGGTAGAGATTTCGAATCTCACTGAATTGGTTGATCTCTATCTCAATGTAAATAACTTATCTGGTAGCATTCCAAAGGAGATTGGAAAAATGACTAGCCTACAAGTGCTGCAGTTAGGCTATAACCAGCTAGTTGGGAACATACCAAAGGAGATCGCTTCGTTGAAGCAGCTTAATGTTCTGGCTTTGCAACATAACAGATTAACTGGTTCAATTCCTCCAAGCTTGGGGAACCTAGAAATGCTAAGGAGGCTAAATTTGAGCTTCAACAACTTCAATGGTGTAATTCCTGCAACATTAGCTGATATTGCACACTTGGAAGTTCTAGATGTTCAAAACAATTCTCTATCAGGAATTGTCTCTTCTGCATTGAGGAATCTTGGGAAAGGATTTCAATATGCAAACAATCAAGGTCTGTGCACAACTGGGTTTGAGTTTTCAACCTTGAAAGCTTGCAACAAAGATGGTATATATGATAACCAGATTAGTATCCCAAATACACCAATTAACAATTCTTACCCAAAAGCTTTCCCTGACTCTGCCAGCATCAAGTTTCATTGTAACCAGACTCATTGCTCAAAATCAAGAAGATTTCCTCAAGCTGTCATTGTGGCAAGTGTCATAACTGCCATAATCACACTAATAGGTTCTGGGTTTGTCACATTTGTCAGATATCGCCGGAAAAAGCAGAGGATCCTGCATACGGCGGATTCTTCTGTAAGCCAACTTAGCCCTGTCCAACCTATGGTATACACAAGAAGTCCATCTCCACTTGTTAATCTTGAGTATTACAACAATGGATTGGATCCACTTGCTGATGGTAAACATTGTAGTGGATTATCCCATGAATATTTAAACAAGTTTAGGTTCAACCTCGATGAGATTGAATCAGCAACGCAATATCTTTCAGAGGCCAATTTATTGGGTAAGAGCAAATTCTCGGCCATCTACAAAGGAATTCTCAGAGATGGTTCTCCTGTGGCTATCAGAAGCATTAATGTGACATGCTGCATACCTGAGGAAGTTGAATTCTTGAAGGGATTGAGCCTACTAACCTCACTGAGACATGAAAACATTGTAAAGATGAGAGGTTTTTGTTGCTCAAGTAGTAGAGGCGAATGTTACCTTGTCTACGATTTTGTCACCAGGGGTACTCTCTCTCAATATCTTGACATGGAAGATGGAAGTCAAAATGTGCTTGAGTGGTCTAAGAGGGTTTCCATCCTCAAGGGCATTGCAAAAGGTCTTGAATATCTGCACAGCAATGAAGCAAGCAAACCTACAATAGTTCACCAAAATATTTCAGTTGAAAAAGTTCTTCTTGACAATCAGTTTAACCCATTGATCATGGATGCCGGTCTCCCCAAGCTTCTAGCAGACGACATCGTTTTCTCGGCTCTGAAAGTTAGTGCTGCCATGGGATACCTAGCTCCTGAATACATTACTACTGGACGCTTCACCGAGAAGAGCGACATATATGCATTTGGTGTCATTGTTCTTCAAGTTCTATCTGGGAAGACAACAGTAGGGGGTTCAATCAGAATGGCAGTTGAGTCTTTTAGATTTGATGATTTTGTGGATCCAAATCTAAAGGGAAAATATTTGAAACCAGAAGCAGCAATTTTTTCAAAGCTTGCAACAAGGTGCACTCATGAGCTTCCTGAGCAAAGGCCAAACATGGTGGAGGTGATTCAGGAACTAAGCTTGTTTCCTGCTCATTCACCATGA 2064 0.4118 MNSFHFLLLLLFFPLLALLISPKLVHGNAELRALMDLKSSLDPEGKVLGSWTSDGDPCTDSSFLGVACNQHRKVANISLAGRGLSGMVSPSVAELKCLSGLYLHYNIISGEIPVEISNLTELVDLYLNVNNLSGSIPKEIGKMTSLQVLQLGYNQLVGNIPKEIASLKQLNVLALQHNRLTGSIPPSLGNLEMLRRLNLSFNNFNGVIPATLADIAHLEVLDVQNNSLSGIVSSALRNLGKGFQYANNQGLCTTGFEFSTLKACNKDGIYDNQISIPNTPINNSYPKAFPDSASIKFHCNQTHCSKSRRFPQAVIVASVITAIITLIGSGFVTFVRYRRKKQRILHTADSSVSQLSPVQPMVYTRSPSPLVNLEYYNNGLDPLADGKHCSGLSHEYLNKFRFNLDEIESATQYLSEANLLGKSKFSAIYKGILRDGSPVAIRSINVTCCIPEEVEFLKGLSLLTSLRHENIVKMRGFCCSSSRGECYLVYDFVTRGTLSQYLDMEDGSQNVLEWSKRVSILKGIAKGLEYLHSNEASKPTIVHQNISVEKVLLDNQFNPLIMDAGLPKLLADDIVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTTVGGSIRMAVESFRFDDFVDPNLKGKYLKPEAAIFSKLATRCTHELPEQRPNMVEVIQELSLFPAHSP 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151228g00010 687 Gene3D Phosphorylase Kinase; domain 1 385 492 - -
Stsc151228g00010 687 Gene3D Transferase(Phosphotransferase) domain 1 493 682 - -
Stsc151228g00010 687 SMART LRR_typ_2 215 238 IPR003591 -
Stsc151228g00010 687 SMART LRR_typ_2 191 214 IPR003591 -
Stsc151228g00010 687 SMART LRR_typ_2 119 143 IPR003591 -
Stsc151228g00010 687 SMART LRR_typ_2 167 190 IPR003591 -
Stsc151228g00010 687 SUPERFAMILY L domain-like 35 239 - -
Stsc151228g00010 687 Pfam Protein tyrosine and serine/threonine kinase 418 679 IPR001245 GO:0004672|GO:0006468
Stsc151228g00010 687 FunFam Protein NSP-INTERACTING KINASE 2 27 177 - -
Stsc151228g00010 687 ProSiteProfiles Protein kinase domain profile. 414 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151228g00010 687 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 282 680 - -
Stsc151228g00010 687 Gene3D Ribonuclease Inhibitor 27 306 IPR032675 -
Stsc151228g00010 687 FunFam Protein NSP-INTERACTING KINASE 2 493 683 - -
Stsc151228g00010 687 Pfam Leucine rich repeat N-terminal domain 28 69 IPR013210 -
Stsc151228g00010 687 SUPERFAMILY Protein kinase-like (PK-like) 392 682 IPR011009 -
Stsc151228g00010 687 FunFam Protein NSP-INTERACTING KINASE 2 385 492 - -
Stsc151228g00010 687 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151228g00010 Stsc-Chr151228 64703 68170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151228g00010 6 527 Miscellaneous Gene Families AT4G22730 56.343 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Stsc151228g00010 PK_Tyr_Ser-Thr 3.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151228g00010 - - gmx:100784155 942.954