Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc151228g00005 | ATGTTCACTATGCTCCTCTCTTCAGTAACTCTAGCCACCACACCCCTCCTCATAATTGCCTTCACCGTCATCTCCGCACTTACATGGCTCCTCTTCCTCAGGCCCAACTCGGCCCACCCAAACCTTCCACCAGGCCCACCTGGCCTCCCCATAGTGGGCAACCTCCTCTCCCTTGACCCAGACCTCCACACTTACTTCTCCTCGCTGGCCCACACCTACGGCCCAATATTTAAGCTCCAGCTCGGAAGCAAGCTCGGCATCGTCGTAACCTCCCCTTCGCTGGCCCACCAAGTACTCAAGGAACACGACACCATTTTCGCCAACCGCGACGTCCCTGCTGCCGCAAGAGCCGCCAACTACGGAGGATCCGACATCGCATGGACATCGTACGGACCTGAATGGCGTATGCTGAGAAAAGTGTGCGCCCTCAAGATGCTGAGCAACAACACACTCGACTCCGTCTACGAGCTCCGCCGCAACGAGGTCCGGAAAACAGTGGCGTTCTTGTACGAGCGGGTCGGGTCAGAGGTGAACGTTGGGGAACAAGCGTTCCTGACGGTGCTGAATGTGATAACGGAAATGATGTGGGGCGGAGCGGTGGAGGGGAAGGAGAGGGAGGGATTGGGGGCGGAGTTCAGGGAGGCGGTGGCGGAGATGACGGAACTGTTTGGGAAGCCGAACGTGTCGGATTTTTTTCCTTTGTTGGCAAGGTTTGACTTACAGGGGGTGGAGAGGCAGATGAAGGCGCTGGTGCCGCGGTTCGATGGAATGTTTGAGAGGATGATTGGCGAGAGAGTGAAAGGAGGGAAGAAGAGCAATGATTTCTTGCAGTTTCTGTTGAACTTGAGGGAGGAAGGTGACTCCAAGACCCCACTCACCATGGTTCAACTCAAGGCACTGCTCATGGACATGGTGGTGGGTGGATCTGACACATCCTCCAACACCATCGAATTTGCAATGGCTGAAATGATAAACAATCCAGAGGTAATGAAGAAAGTGCAAGAAGAATTAGAAGCAGTAGTTGGCAGAGACACCATAGTAGAAGAGTCGCACATTCACAAGCTACCTTACTTGCGCGCAGTAATGAAAGAAACCCTTCGATTACACCCAGCACTTCCACTCTTAGTCCCTCACTGCCCCAGTGAAACCACCATCGTGGGAGGCTACACAATCCCAAAGGGTTCTCGCGTGTTCGTGAACGTGTGGGCCATACACAGAGACCCTTCTATTTGGGACAATCCACTTGAGTTTGATTCTAACAGGTTCTTGAATGATAACAAATGGGACTTTAGTGGGAGTGACTTCAGGTATTTCCCATTTGGTTCAGGGAGAAGAATATGTGCTGGGATTGCAATGGCCGAGAGGACGGTTTTGTATTTACTTGCTACTCTTGTGCACTCCTTTAATTGGAAGGTACCTCAAGGAGAGAATCTTGATGTATCAGAAAAGTTTGGTATTGTTCTTAAGAAGAAGATATCTTTAGTTGTCATTCCCACAGTACGACTATCCAAATTAGATCTTTATAAGTAG | 1530 | 0.5111 | MFTMLLSSVTLATTPLLIIAFTVISALTWLLFLRPNSAHPNLPPGPPGLPIVGNLLSLDPDLHTYFSSLAHTYGPIFKLQLGSKLGIVVTSPSLAHQVLKEHDTIFANRDVPAAARAANYGGSDIAWTSYGPEWRMLRKVCALKMLSNNTLDSVYELRRNEVRKTVAFLYERVGSEVNVGEQAFLTVLNVITEMMWGGAVEGKEREGLGAEFREAVAEMTELFGKPNVSDFFPLLARFDLQGVERQMKALVPRFDGMFERMIGERVKGGKKSNDFLQFLLNLREEGDSKTPLTMVQLKALLMDMVVGGSDTSSNTIEFAMAEMINNPEVMKKVQEELEAVVGRDTIVEESHIHKLPYLRAVMKETLRLHPALPLLVPHCPSETTIVGGYTIPKGSRVFVNVWAIHRDPSIWDNPLEFDSNRFLNDNKWDFSGSDFRYFPFGSGRRICAGIAMAERTVLYLLATLVHSFNWKVPQGENLDVSEKFGIVLKKKISLVVIPTVRLSKLDLYK | 509 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc151228g00005 | 509 | Gene3D | Cytochrome P450 | 32 | 499 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | FunFam | Cytochrome P450 - like protein | 32 | 495 | - | - | |
| Stsc151228g00005 | 509 | CDD | CYP76-like | 70 | 498 | - | - | |
| Stsc151228g00005 | 509 | PANTHER | OS08G0547900 PROTEIN | 16 | 509 | - | - | |
| Stsc151228g00005 | 509 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 440 | 449 | IPR017972 | GO:0005506|GO:0016705 | |
| Stsc151228g00005 | 509 | PRINTS | P450 superfamily signature | 447 | 458 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | PRINTS | P450 superfamily signature | 307 | 324 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | PRINTS | P450 superfamily signature | 360 | 371 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | PRINTS | P450 superfamily signature | 438 | 447 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | SUPERFAMILY | Cytochrome P450 | 43 | 501 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | Pfam | Cytochrome P450 | 43 | 491 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | PRINTS | E-class P450 group I signature | 359 | 377 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | PRINTS | E-class P450 group I signature | 400 | 424 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | PRINTS | E-class P450 group I signature | 70 | 89 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | PRINTS | E-class P450 group I signature | 94 | 115 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | PRINTS | E-class P450 group I signature | 447 | 470 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | PRINTS | E-class P450 group I signature | 296 | 313 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | PRINTS | E-class P450 group I signature | 437 | 447 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | PRINTS | E-class P450 group I signature | 316 | 342 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Stsc151228g00005 | 509 | PRINTS | E-class P450 group I signature | 186 | 204 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc151228g00005 | Stsc-Chr151228 | 30820 | 36534 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc151228g00005 | 5 | 508 | Cytochrome P450 | AT4G12300 | 58.708 | 0.0 | 632 |