Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151228g00004 ATGCTCCTCCTAGTTGTTTTCATCATCATCTTTGCCATCACGTGGCTCCTCTTTTTCAGGCCCAACAAGGCCCATCAAAACCTCCCTCCAGGCCCATCAGGTCTCCCAATCCTCGGCAACCTCCTCTCCCTCGATCCCGAACTCCACACCTATTTCGCGGGCCTGGCCCGCACCTACGGCCCGATCTTCAAGCTCCAGCTTGGCGGCAAGCTCGGCATCGTCATCACCTCCCCTACCGTGGCCCGCCAAGTTCTCAAGGATCACGACATCGTTTTCGCCAACCGCGACGTCCCTGCCGCCGGAAGAGCCGCCAGTTACGGCGGATCCGACATCGTCTGGACGCCTTACGGACCCGAGTGGCGGATGCTGAGGAAAGTGTGCGTCCTCAAGATGCTGAGCAACAACACGCTCGACTCCGTGTACGAGCTCCGCCGCAACGAGGTGCGAAAAACGGTCGGATTCTTGTACGATCGGGTCGGGTCAGAGGTGAACGTTGGGGAGCAGGTTTTCTTGACGATTCTGAACGTGATAACGGAGATGATGTGGGGAGGGGCGGTGGAAGGGAAGGAGAGGGAGGGTTTGGGGGCGGAGTTCAGGGAGGCGGTGGCGGAGATGACGGCGCTGCTTGGGAAGCCGAACGTGTCGGATTTTTTCCCCGGGTTGGCAAGGTTTGACTTGCAGGGTGTGGAGAAGCAGATGCAGGCGCTGGTTCCGCGATTCGATGGGATATTCGAGAGGATGATTGGTGAGAGGCTGAAGGAAGGGAACACGAAAAGCAGTGATTTCTTGCAGTTTCTTTTGAATTTGAAGGAGGAAGGTGACTCCAAGACACCACTTACCATGGTTCAACTCAAGTCACTTCTCATGGACATGGTGGTGGGTGGATCTGACACATCCGCCAACACAATTGAATTTGCAATGGCCGAAATGATAAACAACCCAGAGGTAATGAAGAAAGTCCAAGAAGAATTAGAAGCAGTAATTGGCAGAGACACCATAGTAGAAGAGTCACAAATTCACAAGCTACCTTATTTGCGCGCAGTGATGAAAGAAACCCTTCGATTACACCCAGCACTTCCACTCTTAGTCCCTCACTGCCCCAGTGAAACCACCATCGTGGGAGGCTACACAATCCCAAAGGGTTCTCGCGTGTTCGTGAACGTGTGGGCCATACACAGAGACCCTTCTATTTGGGACAAACCCCTTCAGTTTGATCCTACTAGGTTCTTGGAAGATGGTGTTGCTAAATGGGACTTCAGTGGGAGTGATTTTAGTTACTTTCCATTTGGTTCTGGAAGAAGAATATGCGCTGGGATTGCAATGGCTGAGAGGACTGTTCTGCACTCTCTTGCCACGCTTGTGCATTCATTTGATTGGAAGGTACCAGAAACAGAGAAGTTTGATGTGTCTGAAAAGTTTGGTATTGTTCTTAAGAAGAAAGTACCTCTGGTTGCAATTCCTACACCACGGTTATCCAATCCAGATCTTTATAAGTAG 1497 0.5184 MLLLVVFIIIFAITWLLFFRPNKAHQNLPPGPSGLPILGNLLSLDPELHTYFAGLARTYGPIFKLQLGGKLGIVITSPTVARQVLKDHDIVFANRDVPAAGRAASYGGSDIVWTPYGPEWRMLRKVCVLKMLSNNTLDSVYELRRNEVRKTVGFLYDRVGSEVNVGEQVFLTILNVITEMMWGGAVEGKEREGLGAEFREAVAEMTALLGKPNVSDFFPGLARFDLQGVEKQMQALVPRFDGIFERMIGERLKEGNTKSSDFLQFLLNLKEEGDSKTPLTMVQLKSLLMDMVVGGSDTSANTIEFAMAEMINNPEVMKKVQEELEAVIGRDTIVEESQIHKLPYLRAVMKETLRLHPALPLLVPHCPSETTIVGGYTIPKGSRVFVNVWAIHRDPSIWDKPLQFDPTRFLEDGVAKWDFSGSDFSYFPFGSGRRICAGIAMAERTVLHSLATLVHSFDWKVPETEKFDVSEKFGIVLKKKVPLVAIPTPRLSNPDLYK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151228g00004 498 FunFam Cytochrome P450 - like protein 18 484 - -
Stsc151228g00004 498 CDD CYP76-like 56 487 - -
Stsc151228g00004 498 Gene3D Cytochrome P450 19 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS P450 superfamily signature 436 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS P450 superfamily signature 427 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 Pfam Cytochrome P450 29 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 SUPERFAMILY Cytochrome P450 29 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS E-class P450 group I signature 346 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS E-class P450 group I signature 303 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS E-class P450 group I signature 56 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS E-class P450 group I signature 436 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS E-class P450 group I signature 80 101 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS E-class P450 group I signature 172 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS E-class P450 group I signature 426 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151228g00004 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 429 438 IPR017972 GO:0005506|GO:0016705
Stsc151228g00004 498 PANTHER OS08G0547900 PROTEIN 3 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151228g00004 Stsc-Chr151228 23429 27754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151228g00004 4 497 Cytochrome P450 AT4G12300 59.281 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151228g00004 - - vvo:131637263 770.77