Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151228g00001 ATGGGGAGGCAACCTTGTTGTGACAAACTTGGTGTGAAGAAAGGTCCATGGACTGCTGAGGAAGATAAGAAGCTTATAAACTTCATTCTCACCAATGGACAGTGCTGCTGGCGTGCTGTGCCCAAGCTCGCCGGCCTCCGGCGATGCGGCAAGAGCTGCCGCCTTCGCTGGACCAATTACCTTCGCCCCGACTTAAAGAGAGGACTCCTCACTCAGGCAGAGGAGCAGCTTGTTATTGACCTTCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCAGCAAGGTTACCTGGAAGAACAGATAATGAGATCAAGAATCATTGGAACACACACATCAAGAAAAAGCTTATTAAGATGGGGATCGACCCTGTCACTCATGAACCTCTCAATAAAAAAGAATCCCCTGAGGACCAAAAGAATTTGCAGCAGCAACAAGAAGAAGAGCCTAATAATAAGGAAGCTAATAATAATAATAATGATAATAATGGTGATCTCAACTCTGAGGAGAATAATTCAAATTCATCATCTTCATCCCCAACTGAAAATTCTTCATCAGGAGAAGAATCCCTTTTGCTAGATGATTCTCTAATGATGAATGATTTATGGATGGATCATGAAAATCCACTAGTGGATGCATTGTTATGGGACACTACTACTACTACTACCCCTAATGTGGAGGGCACACTCACAGTGCCATGTTGGGAGGATAATAATAATTATGGTTGGTTATTGGACTTTGATGAGGACATTGGTGTTCAAGATTTTGGTTTTAATTGTTTCAATAATGAGATAGATCATCATCATCATTCAAATGCAATGCAAAAGCTATAG 831 0.4224 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLNKKESPEDQKNLQQQQEEEPNNKEANNNNNDNNGDLNSEENNSNSSSSSPTENSSSGEESLLLDDSLMMNDLWMDHENPLVDALLWDTTTTTTPNVEGTLTVPCWEDNNNYGWLLDFDEDIGVQDFGFNCFNNEIDHHHHSNAMQKL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151228g00001 276 FunFam MYB transcription factor 70 148 - -
Stsc151228g00001 276 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc151228g00001 276 Gene3D - 71 116 - -
Stsc151228g00001 276 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Stsc151228g00001 276 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc151228g00001 276 MobiDBLite consensus disorder prediction 125 143 - -
Stsc151228g00001 276 CDD SANT 16 61 IPR001005 -
Stsc151228g00001 276 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc151228g00001 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc151228g00001 276 MobiDBLite consensus disorder prediction 125 188 - -
Stsc151228g00001 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc151228g00001 276 Coils Coil 151 171 - -
Stsc151228g00001 276 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 196 - -
Stsc151228g00001 276 SMART sant 13 63 IPR001005 -
Stsc151228g00001 276 SMART sant 66 114 IPR001005 -
Stsc151228g00001 276 CDD SANT 71 112 IPR001005 -
Stsc151228g00001 276 Gene3D - 12 67 - -
Stsc151228g00001 276 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc151228g00001 276 MobiDBLite consensus disorder prediction 144 188 - -
Stsc151228g00001 276 FunFam MYB transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151228g00001 Stsc-Chr151228 1888 3584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151228g00001 1 261 MYB Transcription Factor Family AT4G12350 56.383 3.89e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151228g00001 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151228g00001 K09422 - qsa:O6P43_024300 322.783