Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151225g00004 ATGGAAGAAGAAACAACAACAACAACTTCATCAACAATCATGGCTGCACTCTCCACTCTCCCTCCCTCCACCCTCTCCGATCTCATCCACTCCGTCATTTCCGCCACGAACCACCGCACCCACCGCCTCGCCCTACTCCTCTCCTCCCCAATCCTCTTCTCTATAACCCTCCACCACCTCCACACCCTTTCTCTCCACCAAAAAACCCTCCTCATCGCCCGACACCTCCTCTCTTTTCTCCACACTCTCACTCGTCACACCGCAATGCCGCCGCCATTATCAACTTCAATGCGGCAACGTGATCTCGACGCGGTTCTCCTCCTTCTCTTGTTCTGCGAGACCCATAACCACAACCCCGAGCTTCTAGAAGCTTCCTTTTCGGAATGGAGGGTGAATTTGGGAAGGCATTTCAGGGAGAAACTATTAGCGGGGGTTTCTATTTGTGGCGGCTTTGGATTACCGAGTATTGGGGAGTGTAAAGGTACGATCTTGATCCCTTACGTGGAAACGGTGGTTCGGTGCATGAGGCTGGTGGGGTCCATGGGGTGTTGTGTAGGGAGAGGGAATAATAAGGACGAGGTGGAGGTGGCAGCGGCGGTGGCGGCGGTAGTGGCCTTGCCGGCGGTGGAGATGGAGGTTGGAGGGAAAGAGTGCGTGATTTGCAAGGAAGAGATGCGCGTGGGGAGGGACGTTTGCGAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGCATTTTGCCGTGGCTTGGAAAGAGGAACACCTGTCCCTGCTGCAGGCTCAGGTTGCCGTCCGATGATGTTTTCGGAGAGATCCAACGGCTGTGGGATATCCTCGTTAAGATGGGTGGAAAAGAATTTTCATCAGGCGGTTAA 873 0.5384 MEEETTTTTSSTIMAALSTLPPSTLSDLIHSVISATNHRTHRLALLLSSPILFSITLHHLHTLSLHQKTLLIARHLLSFLHTLTRHTAMPPPLSTSMRQRDLDAVLLLLLFCETHNHNPELLEASFSEWRVNLGRHFREKLLAGVSICGGFGLPSIGECKGTILIPYVETVVRCMRLVGSMGCCVGRGNNKDEVEVAAAVAAVVALPAVEMEVGGKECVICKEEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRLRLPSDDVFGEIQRLWDILVKMGGKEFSSGG 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151225g00004 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 173 263 - -
Stsc151225g00004 290 SMART ring_2 218 258 IPR001841 -
Stsc151225g00004 290 CDD RING-H2_PA-TM-RING 217 259 - -
Stsc151225g00004 290 ProSiteProfiles Zinc finger RING-type profile. 218 259 IPR001841 -
Stsc151225g00004 290 Pfam Ring finger domain 216 259 IPR001841 -
Stsc151225g00004 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 270 IPR013083 -
Stsc151225g00004 290 SUPERFAMILY RING/U-box 213 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151225g00004 Stsc-Chr151225 40008 40995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151225g00004 1 280 C3H Transcription Factor Family AT5G02750 50.000 4.59e-80 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151225g00004 K11982 - gmx:100818800 323.553