Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151224g00012 ATGCGCAACATTGCAGAGGCATATCTACAGTCACCTGTCAAGAATGCAGTTATTACTGTACCTGCTGCATACTTCAGTGACTCTCAGCGCAAAGCCACCAGGGACGCCGCCGCCATTGGTGGCCTTAATGTTATGAGGATAATCGACGAGCCTACTGCTGCTGCAGCTATTGCTTATGGCCTTTACAAAGGGACAAACTGTCACATAATGAAGGCTACAGCTGGAAATGATCACCTCGGCGGGGAAGATGTTGACAACAGAATGTTTAATTACTTTATGAAGGAGTTCAACAAGAAGAACAATGTGGACATAAGTGGAAATTCAAGAGCCTTGAGGAGGTTGAGAAATGAGTGTGAAAGGGCAAAGAGATTATTACTCTCTTACAATGTTGATGCCTTCATTCAAATTGATAGTTTATTTCAAGGGATTGACTTCTGTTCATCAATCTCTCGTGTTAAGTTTGAGTACCTCAACAGGGACCTGTTTAGAGAGTGCATAGACACTGTAAGTAAGTGTCTTACTGATGCAAACATGGACAAGAACTGTGTGGACCATGTTGTCCTTGTTGGAGGCTCTTCTAGGATTCCGAAAGTGAAGCAGTTACTGCAGGAATTCTTCAATGGAAAGGATCTCTGCATGAGTATCAACCCTGATGAAGTTGTTGCGTTTGGAGCAGCAGTACAAGCTGCTCTGCTGAGTAAACGCTTTAAGAATGTGTTGCTGCATGATGTTTCTCCACTCTCACTTGGTATATTAAGTAAAGGAGATATAATGAGTGTAGTGGTTCCCAGGAATACTACTATTCCGGCGAAGAGGAAACAAGTTTTCTATACATTAGAAGATAATCAAACTGGCTTAAAGTTTAAAGTTTTTGAGGGTGAGAGGGCAAGAGCCACTGATAACAACTTGTTGGGTTGGTTTAGTCTTTCAGGCATACCTAAAGGTCCTAAACGTCACCCTGTTGTGTTAACCTTTGATATTGATTCCAATGGTATCTTATATGTAACTGCTGAAGATGAAACATCTGGAAACAGCAATGAGATTATAATAAGCAATTGTACTGGACGGATGATGTCACAGAAGGAAGTTGCAAGATTGATTCAAGAAGCTAGAGTTTATGAGGCTGAAGACAAGAAGTTTCTTGACAAGGCCAGAGCAAGAAATGATTTGGATGATTGTGTTTACAAAATGGAAAAGGCTTTAAAAGATATGGAGAGGAGCAAAGAAGTAATCACTGTTAGAATTCTTAAGGCCAAGAGTTTGCTTACCGACGATGAAGATCAGCATGAAAAAGGTGTGTTCGAGAAGGAGATGAAGCATCTTCTGAAAGTTTTTGAGCGCATCATTGCAAATATTGGGAAATTAAATTATTGA 1374 0.4054 MRNIAEAYLQSPVKNAVITVPAAYFSDSQRKATRDAAAIGGLNVMRIIDEPTAAAAIAYGLYKGTNCHIMKATAGNDHLGGEDVDNRMFNYFMKEFNKKNNVDISGNSRALRRLRNECERAKRLLLSYNVDAFIQIDSLFQGIDFCSSISRVKFEYLNRDLFRECIDTVSKCLTDANMDKNCVDHVVLVGGSSRIPKVKQLLQEFFNGKDLCMSINPDEVVAFGAAVQAALLSKRFKNVLLHDVSPLSLGILSKGDIMSVVVPRNTTIPAKRKQVFYTLEDNQTGLKFKVFEGERARATDNNLLGWFSLSGIPKGPKRHPVVLTFDIDSNGILYVTAEDETSGNSNEIIISNCTGRMMSQKEVARLIQEARVYEAEDKKFLDKARARNDLDDCVYKMEKALKDMERSKEVITVRILKAKSLLTDDEDQHEKGVFEKEMKHLLKVFERIIANIGKLNY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151224g00012 457 FunFam Endoplasmic reticulum chaperone BiP 1 74 - -
Stsc151224g00012 457 SUPERFAMILY Actin-like ATPase domain 64 232 IPR043129 -
Stsc151224g00012 457 Pfam Hsp70 protein 1 65 IPR013126 GO:0005524|GO:0140662
Stsc151224g00012 457 Pfam Hsp70 protein 70 451 IPR013126 GO:0005524|GO:0140662
Stsc151224g00012 457 FunFam Heat shock 70 kDa 80 164 - -
Stsc151224g00012 457 Gene3D - 1 63 - -
Stsc151224g00012 457 PRINTS 70kDa heat shock protein signature 238 257 - -
Stsc151224g00012 457 PRINTS 70kDa heat shock protein signature 318 334 - -
Stsc151224g00012 457 PRINTS 70kDa heat shock protein signature 215 235 - -
Stsc151224g00012 457 PRINTS 70kDa heat shock protein signature 17 37 - -
Stsc151224g00012 457 PRINTS 70kDa heat shock protein signature 183 199 - -
Stsc151224g00012 457 FunFam Heat shock 70 kDa protein 232 387 - -
Stsc151224g00012 457 SUPERFAMILY Actin-like ATPase domain 1 62 IPR043129 -
Stsc151224g00012 457 Coils Coil 111 131 - -
Stsc151224g00012 457 Gene3D - 70 212 - -
Stsc151224g00012 457 ProSitePatterns Heat shock hsp70 proteins family signature 3. 186 200 IPR018181 -
Stsc151224g00012 457 Gene3D Actin; Chain A, domain 4 80 164 - -
Stsc151224g00012 457 Gene3D - 213 227 - -
Stsc151224g00012 457 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 235 391 IPR029047 -
Stsc151224g00012 457 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 228 410 IPR029047 -
Stsc151224g00012 457 PANTHER HEAT SHOCK PROTEIN 70KDA 1 412 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151224g00012 Stsc-Chr151224 70215 71629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151224g00012 1 452 Calmodulin-binding Proteins AT3G12580 53.360 7.43e-166 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151224g00012 K03283 - gmx:102667578 527.324