Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151224g00001 ATGAATGAGAACAAGCTTGATTTTCATTGTGATTATGGCAGCCGTTCTTCATGTCAATATTTTGGTATAAGACAACAACCTTGGAACATGGGACCATGCAATAACCAACCCCTCAACACGACTTGCGTTGAGGTCGGGGTTGGCATAGGAGGAGGAGAAAGAAGAGGAGGAGGAGAAGGAGAGCAAGTACTACTACCATACTTGACTCAAGCCAAACCATCTACCACCATCATAAGCCGATTCGAGTCGCCGGCGTCGGCCTTCTACGCCACCGAAATCTTCATGGGGTTCCCACAATATGATACCCATCAAGTTGGTAATCCATCACCCAATTATTTGATGCCTACTCAACTCTCCATCAAGAACAACAATAACAATGATATGGAGTTCCCTCTTTATCAATCTTCAAAGGAAGGCCTTTTCTTTGATTCAGTTAATGACCAAAATAGCCCCAACAACAACTTTGAGTTGCCAAATACCTTGCAAGCAATAAAATCTCAATTGAATGGTGATCTTCAATGTAATGGATCACCTGAAAAATCTAATAAAATTCCATGTGGGAATTTTCCTCCCAACAATTTCCTTCCAATTGAACAACATAATAAGTTGTTCATTCATGATGCTGCCCCACTCAATAGGAACATATCAATTCCCAAAGCAAATCAAGAATCTACACTAGTTGGTTGTGGCTCATTCAACTCCCCTGTTCAGCAGCTGAGTTTCTCATCTCAGCAAGAGAAGCTTTCTCCAACAATTTCAGCCGGAAGCCTTGTCTCGAACGGGCCGCTAGCCTCGAGTAAAACGCGCATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGAATGTGTGCATCGACTAGGAGGCGCGGAGAAGGCAACTCCTAAAGCTATACTAAGGCTGATGGATTCAGATGGATTGACAATCTTCCATGTTAAGAGTCATTTGCAGAAATACAGAATTGCTAAGTATATGCCAGAATCAACTCTGGGGAAATCTGAGAAAAGAACCAATGCAGAGAGTGTGCATCTTGATGTCAAAGCTGGCTTGCAAATTAAAGAGGCACTTCAGCTACAATTGGATGTGCAGAGGCGTCTTCATGAACAGCTAGAGATTCAGAGAAAATTACAGTTGCAAATTGAAGAGCAAGGAAAGCAGCTGAAGATGATGTTTGACCGGCAGCAGAAGTCAAATAATATTGAAAATATTTCTAAAGATAATAACAATAATAATCAAGTTACAATGTTAGAAGGGACAGCAATTTCCTACTTCCCTTCAAAGAAAAGTTAG 1290 0.4124 MNENKLDFHCDYGSRSSCQYFGIRQQPWNMGPCNNQPLNTTCVEVGVGIGGGERRGGGEGEQVLLPYLTQAKPSTTIISRFESPASAFYATEIFMGFPQYDTHQVGNPSPNYLMPTQLSIKNNNNNDMEFPLYQSSKEGLFFDSVNDQNSPNNNFELPNTLQAIKSQLNGDLQCNGSPEKSNKIPCGNFPPNNFLPIEQHNKLFIHDAAPLNRNISIPKANQESTLVGCGSFNSPVQQLSFSSQQEKLSPTISAGSLVSNGPLASSKTRIRWTQDLHEKFVECVHRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRIAKYMPESTLGKSEKRTNAESVHLDVKAGLQIKEALQLQLDVQRRLHEQLEIQRKLQLQIEEQGKQLKMMFDRQQKSNNIENISKDNNNNNQVTMLEGTAISYFPSKKS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151224g00001 429 FunFam Myb family transcription factor 266 324 - -
Stsc151224g00001 429 Coils Coil 353 373 - -
Stsc151224g00001 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 264 324 IPR017930 -
Stsc151224g00001 429 Pfam MYB-CC type transfactor, LHEQLE motif 350 397 IPR025756 -
Stsc151224g00001 429 SUPERFAMILY Homeodomain-like 265 321 IPR009057 -
Stsc151224g00001 429 Pfam Myb-like DNA-binding domain 271 320 IPR001005 -
Stsc151224g00001 429 Gene3D - 266 325 - -
Stsc151224g00001 429 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 264 399 IPR044848 GO:0003700
Stsc151224g00001 429 NCBIfam myb-like DNA-binding domain, SHAQKYF class 267 322 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151224g00001 Stsc-Chr151224 3059 5991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151224g00001 247 394 G2-like Transcription Factor Family AT4G28610 56.291 1.04e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc151224g00001 Myb_DNA-binding 8.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151224g00001 - - aip:107619706 684.1