Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151221g00008 ATGAGAAGAATGAATAATGAGAATGAAGATGAGGTGCTTGCCAATGATCAGTCAGGGTTACAGTTGAATGATGAGAGTAATGAAGGACATGGCGGTGTTGTTCTGAAGAAAGGGCCGTGGACAACTTCTGAAGATGCTATGTTGGTCGATTATGTTAATAAGCATGGGGAGGGAAACTGGAATGCTGTTCAGAAGTACTCAGGTCTATTACGCTGTGGGAAAAGTTGCCGATTGCGTTGGGCTAATCATCTAAGACCAAATTTAAAGAAAGGAGCATTTACTGCAGAAGAGGAGAGGTTGATTGCTGAGCTTCATGCTAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGCACAGATAATGAAATAAAGAACTACTGGAACACCCGTATCAAGAGGCGTCAACGTGCTGGCTTGCCACTGTATCCTCCTGAAGTGTGCGTGCAAGCAGTGCAAGAGAATCAACATGGCCGAAGCTCTGGTGGTATTAATGGTGGCAATAAACTGCATCATGATTTTGTTCAAAAAAATTATGAGATACACAGTCCAATATTTGACGGTTGGAATGGTAGTCAGGGTATCCTACCATATGCGCCTGAGCTTCCTGATATTTCTGCTTACACCAGTATGCTGAAAGGTTTTGATTCTTCCGACTATTGTAATTTTGAACAATTAACATCAGCTAACCACAAGCGTCTCCGAGAGTCTACAACACCTTTTATCGGATCTGGTGGTATGAGCACAAATTGGTTTTATCCATTTGATCAAATTAGGGATAACACGTCTGACAAGATTGCACAATCATTTGGCATGCAATCTCCCTTTGATCTTGGACCCTCCCCACACAGCTCGATTTGTTACAGTCATTCACTTTCGAATGGCAATTCCTCTACTTCTAAGCCAACTTATGAGGCTGTGAAGTTTGAGCTCCCTTCACTCCAATATCCAGAAACTGACGTAGGTAGCTGGAGTACATCTCCACCACCTCCTTTGCTTGAGTCAGTTGATGATTTCATTCAATCTCCAATGCCACTTAGTGCACTGGACTCGGATTGTTCTTCCCCACAAAATAGTGGCTTGCTGGATGCCTTGCTTTATCAGGCTAGGACACTGAGCAGTTCAAAGAACCATTATTCTGACAAGAGTTCAAATTCATCTACCGCAACTCCTTGTGACAGAGCGCTCAGTTCCACTTTGAACAAGTATGAGACAGACTGGGACGACTACACTGACACTGTATCGCCATTTGGGGCAACATCAATGTTGAATGAGTATCCTGCTGCTAGTGCCAGTGCAAATTCATTGGATGAACGACCAACAGTTAATTCCTTTAATGTATTTTTCTGTTTTATTTTGTAG 1371 0.4303 MRRMNNENEDEVLANDQSGLQLNDESNEGHGGVVLKKGPWTTSEDAMLVDYVNKHGEGNWNAVQKYSGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCVQAVQENQHGRSSGGINGGNKLHHDFVQKNYEIHSPIFDGWNGSQGILPYAPELPDISAYTSMLKGFDSSDYCNFEQLTSANHKRLRESTTPFIGSGGMSTNWFYPFDQIRDNTSDKIAQSFGMQSPFDLGPSPHSSICYSHSLSNGNSSTSKPTYEAVKFELPSLQYPETDVGSWSTSPPPPLLESVDDFIQSPMPLSALDSDCSSPQNSGLLDALLYQARTLSSSKNHYSDKSSNSSTATPCDRALSSTLNKYETDWDDYTDTVSPFGATSMLNEYPAASASANSLDERPTVNSFNVFFCFIL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151221g00008 456 MobiDBLite consensus disorder prediction 1 37 - -
Stsc151221g00008 456 FunFam Transcription factor MYB97 92 165 - -
Stsc151221g00008 456 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Stsc151221g00008 456 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Stsc151221g00008 456 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Stsc151221g00008 456 SMART sant 36 86 IPR001005 -
Stsc151221g00008 456 SMART sant 89 137 IPR001005 -
Stsc151221g00008 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Stsc151221g00008 456 FunFam MYB-related transcription factor 36 89 - -
Stsc151221g00008 456 CDD SANT 39 84 IPR001005 -
Stsc151221g00008 456 CDD SANT 92 133 IPR001005 -
Stsc151221g00008 456 Gene3D - 36 89 - -
Stsc151221g00008 456 MobiDBLite consensus disorder prediction 11 25 - -
Stsc151221g00008 456 Gene3D - 92 138 - -
Stsc151221g00008 456 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 6 442 - -
Stsc151221g00008 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Stsc151221g00008 456 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Stsc151221g00008 456 ProSiteProfiles Myb-like domain profile. 35 84 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151221g00008 Stsc-Chr151221 56945 61832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151221g00008 34 380 MYB Transcription Factor Family AT3G11440 49.722 1.07e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151221g00008 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151221g00008 K09422 - gmx:100810415 671.003