Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151221g00007 ATGAGAAGAATGAATAATGAGAATGAAGATGAGGTGCTTGCCAATGATCAGTCAGGGTTACAGTTGAATGATGAGAGTAATGAAGGACATGGCGGTGTTGTTCTGAAGAAAGGGCCGTGGACAACTTCTGAAGATGCTATGTTGGTCGATTATGTTAATAAGCATGGGGAGGGAAACTGGAATGCTGTTCAGAAGTACTCAGGTCTATTACGCTGTGGGAAAAGTTGCCGATTGCGTTGGGCTAATCATCTAAGACCAAATTTAAAGAAAGGAGCATTTACTGCAGAAGAGGAGAGGTTGATTGCTGAGCTTCATGCTAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGCACAGATAATGAAATAAAGAACTACTGGAACACCCGTATCAAGAGGCGTCAACGTGCTGGCTTGCCACTGTATCCTCCTGAAGTGTGCGTGCAAGCAGTGCAAGAGAATCAACATGGCCGAAGCTCTGGTGGTATTAATGGTGGCAATAAACTGCATCATGATTTTGTTCAAAAAAATTATGAGATACACAGTCCAATATTTGACGGTTGGAATGGTAGTCAGGGTATCCTACCATATGCGCCTGAGCTTCCTGATATTTCTGCTTACACCAGTATGCTGAAAGGTTTTGATTCTTCCGACTATTGTAATTTTGAACAATTAACATCAGCTAACCACAAGCGTCTCCGAGAGTCTACAACACCTTTTATCGGATCTGGTGGTATGAGCACAAATTGGTTTTATCCATTTGATCAAATTAGGGATAACACGTCTGACAAGATTGCACAATCATTTGGCATGCAATCTCCCTTTGATCTTGGACCCTCCCCACACAGCTCGATTTGTTACAGTCATTCACTTTCGAATGGCAATTCCTCTACTTCTAAGCCAACTTATGAGGCTGTGAAGTTTGAGCTCCCTTCACTCCAATATCCAGAAACTGACGTAGGTAGCTGGAGTACATCTCCACCACCTCCTTTGCTTGAGTCAGTTGATGATTTCATTCAATCTCCAATGCCACTTAGTGCACTGGACTCGGATTGTTCTTCCCCACAAAATAGTGGCTTGCTGGATGCCTTGCTTTATCAGGCTAGGACACTGAGCAGTTCAAAGAACCATTATTCTGACAAGAGTTCAAATTCATCTACCGCAACTCCTTGTGACAGAGCGCTCAGTTCCACTTTGAACAAGTATGAGACAGACTGGGACGACTACACTGACACTGTATCGCCATTTGGGGCAACATCAATGTTGAATGAGTATCCTGCTGCTAGTGCCAGTGCAAATTCATTGGATGAACGACCAACAGTTAATTCCTTTAATGACAAGATTGTGAAAACAGAGAATGTTGATCAGGTTTGGTCCCCAAACAGTGAAAATCAAGGCATGTCTGCGATCAAAATTACTCGGCCAGATGTTTTGCTTGCTTCAGATTGGCTTCAGCAGGGTTCAGAGCGCGACATGAAGCAAGGAAGCATGGCTGATGATATATCTGCTCTTTGTGGAGATGATTTAGCCACTGATTACAAGCATACAAGCACCGGAACTTCTAGGTTGAGTCAGGTATGGGGCCTTGGTTCTTGCGCAAGGAACATCATGCCTGCTCTGTGTGAAGATTCTGACCGTGATTAA 1656 0.4384 MRRMNNENEDEVLANDQSGLQLNDESNEGHGGVVLKKGPWTTSEDAMLVDYVNKHGEGNWNAVQKYSGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCVQAVQENQHGRSSGGINGGNKLHHDFVQKNYEIHSPIFDGWNGSQGILPYAPELPDISAYTSMLKGFDSSDYCNFEQLTSANHKRLRESTTPFIGSGGMSTNWFYPFDQIRDNTSDKIAQSFGMQSPFDLGPSPHSSICYSHSLSNGNSSTSKPTYEAVKFELPSLQYPETDVGSWSTSPPPPLLESVDDFIQSPMPLSALDSDCSSPQNSGLLDALLYQARTLSSSKNHYSDKSSNSSTATPCDRALSSTLNKYETDWDDYTDTVSPFGATSMLNEYPAASASANSLDERPTVNSFNDKIVKTENVDQVWSPNSENQGMSAIKITRPDVLLASDWLQQGSERDMKQGSMADDISALCGDDLATDYKHTSTGTSRLSQVWGLGSCARNIMPALCEDSDRD 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151221g00007 551 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 6 507 - -
Stsc151221g00007 551 MobiDBLite consensus disorder prediction 1 37 - -
Stsc151221g00007 551 FunFam MYB-related transcription factor 36 89 - -
Stsc151221g00007 551 SMART sant 36 86 IPR001005 -
Stsc151221g00007 551 SMART sant 89 137 IPR001005 -
Stsc151221g00007 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Stsc151221g00007 551 CDD SANT 39 84 IPR001005 -
Stsc151221g00007 551 CDD SANT 92 133 IPR001005 -
Stsc151221g00007 551 MobiDBLite consensus disorder prediction 11 25 - -
Stsc151221g00007 551 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Stsc151221g00007 551 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Stsc151221g00007 551 Gene3D - 92 138 - -
Stsc151221g00007 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Stsc151221g00007 551 Gene3D - 36 89 - -
Stsc151221g00007 551 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Stsc151221g00007 551 FunFam Transcription factor GAMYB 92 138 - -
Stsc151221g00007 551 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Stsc151221g00007 551 ProSiteProfiles Myb-like domain profile. 35 84 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151221g00007 Stsc-Chr151221 56945 61832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151221g00007 32 546 MYB Transcription Factor Family AT5G06100 43.100 2.25e-123 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151221g00007 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151221g00007 K09422 - gmx:100810415 746.117