Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151220g00006 ATGGTGAGAGCTCCTTACTTTGATGCCAATGGAATAAAGAAAGGTGCCTGGAGTGAGGAAGAGGATAAGAGGCTTATTGCTTATGTTGAGAGATATGGTCACCCTAATTGGCGTCAACTCCCAAGGCTTGCAGGTATTATAATTAACTACTTCCTCTGCTTAAATAAGTGTTTGTTGAGATGTGGAAAGAGCTGCAGACTTCGTTGGATGAATTACCTGCGGCCAAATCTAAAGAGAGGGAACTACACCCAAAAGGAAGAGCAACTTATCATGGATTTGCATAAGGAACATGGAAACAAATGGTCTCTGATTGCTGAAAATCTACCTGGAAGAACCGACAACGAGATCAAGAATTATTGGCATAGCCACCTGAAGAAATTCCAAAACCGCAATTTGAACAACACAACTTATGATGATGATGATTTGAACAAGTCCAAGTCCAAGTCTTCTTGTGAGAGTACCATGGAACATGAAAGACCAAAATGTGAACTGAGAGATGATTCACACCACATCTTGGAAAGTTCAGTGTCCAATGTGTCAACTGAGTCTTCCTATTCCTCCTACACGGAAGAAGACAACAAGGACAACAACGACAACGACGACAACAATAACTCATGGCTCTGTTTTTCCTCTCGTGGTGAAGAAGAGTCAAATAGGGAAGAGGATAGGGTTGCTTCGTGGGATAAAGCAACTTTGTTTGATGAGTTTGGCTCCAGTTTTTGGACTGAACCATTTATTTCAGATAATGCTTTTAATCAAGATTATAGTTACATTTTGTATGATAGAGAAGATCCTTTTTTCGTTTGA 807 0.4015 MVRAPYFDANGIKKGAWSEEEDKRLIAYVERYGHPNWRQLPRLAGIIINYFLCLNKCLLRCGKSCRLRWMNYLRPNLKRGNYTQKEEQLIMDLHKEHGNKWSLIAENLPGRTDNEIKNYWHSHLKKFQNRNLNNTTYDDDDLNKSKSKSSCESTMEHERPKCELRDDSHHILESSVSNVSTESSYSSYTEEDNKDNNDNDDNNNSWLCFSSRGEEESNREEDRVASWDKATLFDEFGSSFWTEPFISDNAFNQDYSYILYDREDPFFV 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151220g00006 268 SUPERFAMILY Homeodomain-like 11 120 IPR009057 -
Stsc151220g00006 268 CDD SANT 16 73 IPR001005 -
Stsc151220g00006 268 CDD SANT 81 124 IPR001005 -
Stsc151220g00006 268 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 210 - -
Stsc151220g00006 268 ProSiteProfiles Myb-like domain profile. 9 73 IPR001005 -
Stsc151220g00006 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 73 IPR017930 -
Stsc151220g00006 268 MobiDBLite consensus disorder prediction 173 187 - -
Stsc151220g00006 268 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Stsc151220g00006 268 Gene3D - 81 126 - -
Stsc151220g00006 268 Gene3D - 7 79 - -
Stsc151220g00006 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Stsc151220g00006 268 MobiDBLite consensus disorder prediction 135 213 - -
Stsc151220g00006 268 MobiDBLite consensus disorder prediction 137 172 - -
Stsc151220g00006 268 Pfam Myb-like DNA-binding domain 14 73 IPR001005 -
Stsc151220g00006 268 Pfam Myb-like DNA-binding domain 79 124 IPR001005 -
Stsc151220g00006 268 SMART sant 78 126 IPR001005 -
Stsc151220g00006 268 SMART sant 13 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151220g00006 Stsc-Chr151220 54569 56022 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151220g00006 1 143 MYB Transcription Factor Family AT2G31180 57.343 6.79e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151220g00006 Myb_DNA-binding 7.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151220g00006 K09422 - gmx:100781032 290.041