Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151220g00001 ATGGTGAGAGCTCCTTTCTATGACAAACATGGAGTAAAGAAAGGTGCATGGAGTAGAGAAGAGGATCAAAGGTTAATAGCTTTTGTTCAAAGATATGGTCATTCAAATTGGCGTCAGCTCCCAAAGTTTGCAGGTTTAGCAAGGTGTGGGAAAAGTTGCAGACTTAGGTGGTTGAATTATTTGAGGCCAAATCTAAAACATGGGAACTACACCAAAGAGGAAGAAGAAATCATAATCAAATTACACCAAGAATTAGGAAATAGATGGTCTTTGATTGCTGAAAAACTACCTGGAAGAACAGACAATGAAATAAAGAACTACTGGCATAGCCACCTAAAGAAGTTATTATCATCAAAAACCAACAACAACAATGAGATCAACACATCATCATCATCTGAATCTGAATCAAAATCCAATGATGATGATATTCTTGAAGGAAAAAATGCCAATCATCAGTTCAAAGATTCTGAAAATTATGATTATGTTGATAGTGCTAATAATAATGATACTACTAAATTCCAGCACCATGTTCTAGAAAGTTCATCATCAACAACAGAACCTTGTTCATATACTGATGTTGAACAATCAACACCGAAAAACTCTCCAACATCAAGCGAAGATGATTATTGTGGGGTTCTTCCATTATCAGCACCATTTGAAGAATTTGGTGGAGATTTTTGGACTGAGCCATTCATAGTGGCAAATAATAATGATGCATATGTTGATGATCAAATAATAATTAGTGGTGAAGACGGTGTTGGGTTTTTTGTTCCATACTTCTATGAGGGTGCAGATTTTTGTTTTAACTTGTAG 813 0.353 MVRAPFYDKHGVKKGAWSREEDQRLIAFVQRYGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGNYTKEEEEIIIKLHQELGNRWSLIAEKLPGRTDNEIKNYWHSHLKKLLSSKTNNNNEINTSSSSESESKSNDDDILEGKNANHQFKDSENYDYVDSANNNDTTKFQHHVLESSSSTTEPCSYTDVEQSTPKNSPTSSEDDYCGVLPLSAPFEEFGGDFWTEPFIVANNNDAYVDDQIIISGEDGVGFFVPYFYEGADFCFNL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151220g00001 270 CDD SANT 69 112 IPR001005 -
Stsc151220g00001 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc151220g00001 270 Gene3D - 7 67 - -
Stsc151220g00001 270 CDD SANT 16 61 IPR001005 -
Stsc151220g00001 270 Gene3D - 68 144 - -
Stsc151220g00001 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc151220g00001 270 MobiDBLite consensus disorder prediction 119 207 - -
Stsc151220g00001 270 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Stsc151220g00001 270 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc151220g00001 270 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc151220g00001 270 MobiDBLite consensus disorder prediction 119 134 - -
Stsc151220g00001 270 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc151220g00001 270 FunFam MYB-related transcription factor 13 66 - -
Stsc151220g00001 270 MobiDBLite consensus disorder prediction 135 158 - -
Stsc151220g00001 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 188 - -
Stsc151220g00001 270 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc151220g00001 270 SMART sant 13 63 IPR001005 -
Stsc151220g00001 270 SMART sant 66 114 IPR001005 -
Stsc151220g00001 270 MobiDBLite consensus disorder prediction 159 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151220g00001 Stsc-Chr151220 15738 17182 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151220g00001 1 213 MYB Transcription Factor Family AT2G31180 45.070 6.03e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151220g00001 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151220g00001 K09422 - gmx:100781032 231.491