Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151217g00016 ATGGAAATGGAATTGCAAGCTGAAGCTGATGCTGATTTTGTTACGAATGACATGCTCACACTCCCACACGATCCCAACCACATCCTTGATCATGATAATTTGGCTATTGAAGGCGAAAGATGTGGAATATGCATGGATATTGTTATTGATAGGGGCGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACAATCACTAATCTCTGCCCACTTTGCCAGAACGAGTTTCATTTGATCACTTGTGTACCAGTTTATGATACCATTGGAGGCAATAAAGTTGAAGATGACTCAATCTTCAGAGATGACGAATGGTCGATTGAAGGGAAGAACAATACATTATCGTTTCCCTCCTACTACATTGATGAAAATGCAGTTACTTGCTTGGATGGTGATGGCTGCAAAGTTCGAAGTGGATTGGCTACTGTTGAAGGAGATTCTGATGTTGATACATCAATTGCATGTGATTCATGTGATACATGGTATCATGCCTTCTGTGTGGGATTTGATACCGAAGGTACATCTGAAAGTACATGGTTATGTCCAAGATGTGTGGTTGGAGAAGTTTCTAAAGGAAGAGACTCTGATCCAATGGAGAGCACAAAGATAGAATGTAACCCAGAGCATATTAACAATCAATGTCAGACTGAAAATTCCTTTTCAAGAAAAGTTTCGGTGTCTGTTGCTGATGCAGGAGAGACAGCTGTTGTTGTTTCAATGGTTGATGGACATAAATGGGCTCCATCAACAAGTGAGAAAGGCCTCTTGCCTCTTGAAATTGGCAGGGATCAATTGACTGAATCATGTATAAAAGAGTCTGACACAACTAATCAGCAGAAAGCAACTGAGAAGATTATGTCACCAATTGTGAAGGAAAAAGAGCTGGAGTTGTGCTTATCACACAATGTATCTGGTAGCCTAAGTTCTAAATCCTTGGAGCACAATGATTTAAGGGAAAGTGCTCATGGAGCAAGTAGTGGACCAAGTAACTTTGATGAAACAAAGTTAGTTGATGAGTCCCATGTCAAAACTAGTCCATCCAGAAATGAATCTGATATGGGTCTTCATCTTGGTTTGTCAGTGGGCTCTTTCCTATCAGTTGATAATGTGGACAAAAATGAAACAAAAGATCACACAACTGGTGTCAAGCACTTGAGTCCAGATGAAGGTTTTATGGAAGGAGATGTAATTGAAAACAATGATAAGAAGGATAATGGTAGTGTAAATGCTGGGAAGAGAAAGCATGTTGATCGCAGCAATGATGAAGTTCATAAGAAAGTTGATGATGGGGATGTGAAGCCTGAATTTCCAATTGAAGTGTCTCGAAAGAAAATTAAAGCTGCTGGTGGTCAAATGAACAGTGCTAATAACTCAGCGGATGCTTTTCTTTCAGACAATGCTCAAAAGAGCCCTGCTTTGAAACATTCGGCATCCAAGGAGGTTGTCAGACCAACTATAATGAATATAGTTAAAGGTACAAACCGAAGGCTTTCCAAGGGACCTGCTGGCACTAATTCATCTGCCAATATGTCTAAAAAGGATGAAAATATGGCTGGATTGAGGGTAAAAAAGATAATGAAGAGAGTTGCTGATGATGGAGAATCATCCTTGATAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCGATAAACTTTGAGGAAAACATTGATGCAAAGCTTCTCGCAGCATTCAGGGCTGCTATAGCTGGACCTAAAACTGAACCTGTAAATAAGTTAACACCTTCACTTTTAAAGGCAAAGAAGTCAATGTTGCAGAAAGGAACGGTACGTGAGCATCTCACAAAGAAAATTTTTGCTACTTCAAATGGAAAAAGAAAGCGAGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGGTGCATGAGAGCTACAAGGCCTGAAAAAATTGAAACTTTAAAATCAGTGCTAGATCTACTAAGAAAAAGTTCAGAGTCGACGCAGGGTCCTGAATGTCAGGCCAAGGATACTATTCTTTCCAGGTTGTATCTAGCAGATACGTCTGTTTTCCCCCGAAAAGATGATGTCAAGCCCCTCTCTGTACTTAAAACCGATACTAGCTCAGAGCAGACTAAACAAAATAACCCATCAGGAAAAGGATCAAATCTATCTTTTGAAAACAATTCTTATATAGGAACAGATACAAAAAATCTTTCATGCAATGCCAGAGTTTGTTCATCTGAAACAAAAGTAGATAAGAAGATTGTACATGGCTCAGCTGGTGATAACTCAGCTTCTCGTAAGACACCAGTTACTTCTTCAGCTGGTGCCAAAGTTAATGCTAAGGAATTAGGCCTTAAATCAGATTCTATGAAGAGTGATAAAAAGAAATGGGCTTTAGAGTTTCTTGCTAAGAAAACAGCTGCTGAAAGCAAAAAGACGGCAAATGGAAGTCAGGAAGACAATGCAATTTTTAAAGATAAATATCCTTTGCTTGCCCAACTACCTGCTGATATGAGACCAGTACTGGGACCTTCTTGTCACAACAAAATCCCAGTATCAGTGAGGCAGACACAGCTTTACCGTCTAACAGAGCGCTTGTTGAGGAACACAAATCTGCCAGTCATTCGCAAAACTGCAGATACAGAATTGGCTGTTGCGGATGCAATCAATATTGAAAAGGAGGTTGCTGACAGATCAAGCAGCAAGCTTGTGTATCTGAACCTCTGTGCACAAGAGCTCCGTCATCGCGCAAATAACGCAAAATCCAATGTAGCTGAAGATACAAATTCCCCAGGCTCATCTGCCAAGCTTTCTGATCAATCAGAACAAAATGCTGATGATTGTTCGATTGACCCTGCTGTTGAAGCCTTGAAAAATGCTGGTCTATTTTCTGATTCACCGCCTAGCAGTCCACATGAGAACAGAGTAACAGGTAATGAAAATGATACTTCAGGGCCGGATAATATACTTGAATTGGATTCTCATCCTGAGCTGGACATTTATGGCGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGGGTTTCAAAGGTCTTAAACCCAAAACCAGAGGAAAATGAGTCGAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATACTGCTTTGGATGATTCAGACTGTAAAGGGTCCCCTAACGCTGAAGTACTACGGGATGCCTCCGGCTCAACAGACTCTCAGATCGAAACAGTCCCTAGGGACTCAGCAACTGATGCAGAGATTGGCCGGCCTTCTGTTTCTGTTTCTTCTGAGTTATGTGAAAGTACAGTTGAGCCAGCTGATTCAGAATTTGAAGAATTGTATGGCCCTGACAAAGAACCACCCATAAAAACATTTCCAGATGCTGAACCAAGAACAACATGTGGAGAGGGCAAGAAAGAAACACCAAGTGAGGCCACTGACAAATCTAATGTATCGGAGACCAGTAAAAGTTCCCCAAGGAAGGAAGAGAAATCTGATGATATGAGTGCCAAGCAGTCTGAGTGTGATTCTGTAAAACATGTAACAAAGAAGGTAGAAGCCTATATCAAGGAGCATATGAGGCCACTGTGCAAGAGTGGCGTGATCACAGCAGAACAATACAGGTGGGCAGTTGCAAAAACAACAGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAGCTTGCAGAGCAGTATGCCGAAGCAGCCCAACAGAACAAAAAAAATTGA 3765 0.4072 MEMELQAEADADFVTNDMLTLPHDPNHILDHDNLAIEGERCGICMDIVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFHLITCVPVYDTIGGNKVEDDSIFRDDEWSIEGKNNTLSFPSYYIDENAVTCLDGDGCKVRSGLATVEGDSDVDTSIACDSCDTWYHAFCVGFDTEGTSESTWLCPRCVVGEVSKGRDSDPMESTKIECNPEHINNQCQTENSFSRKVSVSVADAGETAVVVSMVDGHKWAPSTSEKGLLPLEIGRDQLTESCIKESDTTNQQKATEKIMSPIVKEKELELCLSHNVSGSLSSKSLEHNDLRESAHGASSGPSNFDETKLVDESHVKTSPSRNESDMGLHLGLSVGSFLSVDNVDKNETKDHTTGVKHLSPDEGFMEGDVIENNDKKDNGSVNAGKRKHVDRSNDEVHKKVDDGDVKPEFPIEVSRKKIKAAGGQMNSANNSADAFLSDNAQKSPALKHSASKEVVRPTIMNIVKGTNRRLSKGPAGTNSSANMSKKDENMAGLRVKKIMKRVADDGESSLIVQNLRKEIREAVRNKSSINFEENIDAKLLAAFRAAIAGPKTEPVNKLTPSLLKAKKSMLQKGTVREHLTKKIFATSNGKRKRAWDRDCEIEFWKYRCMRATRPEKIETLKSVLDLLRKSSESTQGPECQAKDTILSRLYLADTSVFPRKDDVKPLSVLKTDTSSEQTKQNNPSGKGSNLSFENNSYIGTDTKNLSCNARVCSSETKVDKKIVHGSAGDNSASRKTPVTSSAGAKVNAKELGLKSDSMKSDKKKWALEFLAKKTAAESKKTANGSQEDNAIFKDKYPLLAQLPADMRPVLGPSCHNKIPVSVRQTQLYRLTERLLRNTNLPVIRKTADTELAVADAINIEKEVADRSSSKLVYLNLCAQELRHRANNAKSNVAEDTNSPGSSAKLSDQSEQNADDCSIDPAVEALKNAGLFSDSPPSSPHENRVTGNENDTSGPDNILELDSHPELDIYGDFEYDLEDEDYIGVSKVLNPKPEENESKVKLVFSTMNLKKSDTALDDSDCKGSPNAEVLRDASGSTDSQIETVPRDSATDAEIGRPSVSVSSELCESTVEPADSEFEELYGPDKEPPIKTFPDAEPRTTCGEGKKETPSEATDKSNVSETSKSSPRKEEKSDDMSAKQSECDSVKHVTKKVEAYIKEHMRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNKKN 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 1045 1176 - -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 1087 1101 - -
Stsc151217g00016 1254 SUPERFAMILY RING/U-box 23 86 - -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 757 776 - -
Stsc151217g00016 1254 ProSiteProfiles Zinc finger PHD-type profile. 73 193 IPR019787 -
Stsc151217g00016 1254 Pfam ElonginA binding-protein 1 840 939 IPR031736 -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 964 989 - -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 313 340 - -
Stsc151217g00016 1254 ProSiteProfiles Zinc finger RING-type profile. 41 80 IPR001841 -
Stsc151217g00016 1254 Coils Coil 545 565 - -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 762 776 - -
Stsc151217g00016 1254 Pfam PHD-finger 155 191 IPR019787 -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 920 947 - -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 1062 1078 - -
Stsc151217g00016 1254 SMART ring_2 41 79 IPR001841 -
Stsc151217g00016 1254 PANTHER RING FINGER PROTEIN 41, 151 122 1244 - -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 1131 1145 - -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 961 994 - -
Stsc151217g00016 1254 SMART PHD_3 139 191 IPR001965 -
Stsc151217g00016 1254 Coils Coil 911 931 - -
Stsc151217g00016 1254 Pfam Zinc finger, C3HC4 type (RING finger) 41 79 IPR018957 GO:0046872
Stsc151217g00016 1254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 120 IPR013083 -
Stsc151217g00016 1254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 195 IPR013083 -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 701 726 - -
Stsc151217g00016 1254 SUPERFAMILY FYVE/PHD zinc finger 154 193 IPR011011 -
Stsc151217g00016 1254 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 381 439 - -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 1153 1176 - -
Stsc151217g00016 1254 MobiDBLite consensus disorder prediction 1110 1124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151217g00016 Stsc-Chr151217 66029 73118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151217g00016 41 92 C3H Transcription Factor Family AT3G58030 37.037 9.91e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc151217g00016 PHD 1.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151217g00016 - - adu:107479708 2201.79