Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151217g00006 ATGGCTTCATCGTTACTAGTGGCCCAATTGTGTTTACTGGTTTTCTCTGTATTCCACAATCTTCAAATCACAAGAAGCAAACAACAGGTTTGCGATGTGAAATCATGTGGCGAAATCCAAGATATTCAGTTCCCTTTCGACTTGAAAGAATCCAATCAAGACCCTCGCTGCAGCTATTACCCTGACCCCAGTTTCCAACTCTCCTGCAACCGCAACAACCTCACTCAAACTCAAACAATCCTCACTCTCCCCAAAACAGGGGGCTTGCTAATCAACAACATCGATTACGAGGAACAAACCATCCAAGTCAACGACCCCAAAGGTTGTCTCCCAAAACGATTCTTGCAAAATAAATGGAACCTTTCGGATTCGCCATTCATGCTGGACACAGCACGCTACAGATACTTCAATCTTACCTTCCTGAGTTGCCCCTCAAACTGGACCAAATCCATGGGGATACCTAGAATCGCATGCCTCAGTGACAACAACACGGGAAACTCGGTGATAGTGTCAGGGCTGCGTCCTATTGACACGTCATCAACGTGTGACGTGATATCCACGGCTCTTGTGCCGCTTCCGATAGTGGATATGCCTCAGTGGCCATTCTGGCCTGATCTTAACAACGATATTGGCTTGGCTTGGACCCAACCAAGGTGCTGGGAATGCGCGGTCACCGCCCAACGTTGTGGCTTCGTCAACGATAAGACTTCTCGAGTTGGATGCTTTTCTACTCCCACCAAAACCCCAGGTATTAGTAGCAGTGCCAAATATGGCTTAACCTTAGGAGTGGGAGTACCCGGGCTCCTATGTTTAATTGGGCTTTCATGTTTCATATGCGGTAAGGTCAAGGTTAATATTCATCGCCGAAGGCCCATCAGAGAGTTCACAACAACAATTTCGTTACAGCCCATTACTCTTGGAATGGGCCTTGATAAGTCCACAATTGAGAAGTACCCAAAGACTCTTATCGGTGAGAGTGGGCGCTTGTTGAAGCCCAGTGACAATACCTGCTCAATATGCCTCTCTGAATATGAGCCCAAAGATACTTTGAGGACCATACCTGAGTGCAGCCATTATTTCCATGCTGACTGCATAGATGAGTGGCTCAGAATGAACGGAACGTGCCCCTTATGCAGGAACACTCCGGGGGCAGCATATAGAGTTAACCCATCTTTCTCTTCTTTGTCTTATAACACTTCATCAATGTCCTCTACACCATAG 1221 0.4693 MASSLLVAQLCLLVFSVFHNLQITRSKQQVCDVKSCGEIQDIQFPFDLKESNQDPRCSYYPDPSFQLSCNRNNLTQTQTILTLPKTGGLLINNIDYEEQTIQVNDPKGCLPKRFLQNKWNLSDSPFMLDTARYRYFNLTFLSCPSNWTKSMGIPRIACLSDNNTGNSVIVSGLRPIDTSSTCDVISTALVPLPIVDMPQWPFWPDLNNDIGLAWTQPRCWECAVTAQRCGFVNDKTSRVGCFSTPTKTPGISSSAKYGLTLGVGVPGLLCLIGLSCFICGKVKVNIHRRRPIREFTTTISLQPITLGMGLDKSTIEKYPKTLIGESGRLLKPSDNTCSICLSEYEPKDTLRTIPECSHYFHADCIDEWLRMNGTCPLCRNTPGAAYRVNPSFSSLSYNTSSMSSTP 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151217g00006 406 Pfam Wall-associated receptor kinase galacturonan-binding 31 105 IPR025287 GO:0030247
Stsc151217g00006 406 SMART ring_2 337 378 IPR001841 -
Stsc151217g00006 406 Pfam Ring finger domain 335 379 IPR001841 -
Stsc151217g00006 406 SUPERFAMILY RING/U-box 329 382 - -
Stsc151217g00006 406 ProSiteProfiles Zinc finger RING-type profile. 337 379 IPR001841 -
Stsc151217g00006 406 CDD RING-H2_EL5-like 337 379 - -
Stsc151217g00006 406 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 382 IPR046948 -
Stsc151217g00006 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 383 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151217g00006 Stsc-Chr151217 23159 25306 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151217g00006 26 383 C3H Transcription Factor Family AT2G25410 34.565 6.65e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151217g00006 - - ahf:112732430 687.567