Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151217g00005 ATGGCCACCGTGCCGCCATGTTTATTATTTCTCTTCTTGGTGGCGCTAACAAGAATAATAGGCATAGCAAGAGCTCAATTCTACTGTGAAAGCACAGCATGCGACGCGGGTGGAGTTTCAATTGACTTCCCCTTTTACCAGAGAGAAAGTCAAATCCCTGGATGTGGCTACCCAGGGTTCGAGCTCTCATGCGCCAACAGCACTGACCCGTTACTCACTCTCCCAGCTGAACCAGGTGACTTCACTGTGAAACTAATCTCGTTAGAAGTCCAGCAAGTTTGGATCAACGACCCTCAGCAGTGCCTCCCAAAGCGTATGATACGTGAGCGTGGCCTCAACCTCCGAGGCTCACCCTTTCAATTCACGGATGATTACTCGCTTGTTAACTACACTTTCTTTAGATGCCCTTCCAATTTAACGGCACTGTCTATGGTACCTCCAATAAAGTGTTTGAACTCGGGGGTTAATAGTGGAAACAATTCTTTGGTTGTGGCGATCTTGTCGGATCCGCCGTTTCCAACGCCGTGGACGACGCCTTGCCACGTCATATCGTGGGCTATGATCCCGATTGCGGGAGTGCCGTGGCTGTTCTGGACGGATTATTATTCAGACATAAAGTTGGAATGGGATAACCCAAATTGCGGAAGCTGCGAGGCACGTGGAGGTAGGTGTGGGTTCGTTGGCCCAACGCTCCGGGACACTGCTTTTCGTGTTGGTTGTTACGATCTTCCCACTCAACTTCAAGGCCTTTCAAGGAAAACCAAGTACGGTTTAGGTATAGGCCTAGGAATACCTGGAGGCTTTTGTATTATTGTGCTTGCATATTTGTTCTACGCCAAGATGAAGACATATGAGCAACAGGGGCTATCAAGAAGTGATTTTTCGACCATAATTTTACCGCGGCTTCCTGTTCAAACCATGGGACTGGATGCTGCAAGCATAGAAAAATACCCGAAAACTCTGCTTGGTGAAAGTGGGAGACTGCCTAAGCCTAATGACAATCTGTGTTCCATATGTCTATGTGAGTACCAGCCCAAGGAGACCTTAAGGACCATACCTGAATGCAATCACTATTTTCATGCCAATTGCATAGATGGATGGCTCAAGATGAATGCTACTTGTCCTCTGTGTCGCAATTTACCTGAAAGATCCGTTTCATCATTAACTCCCTCTATACCTACATCTCCCACTCATTAG 1197 0.4737 MATVPPCLLFLFLVALTRIIGIARAQFYCESTACDAGGVSIDFPFYQRESQIPGCGYPGFELSCANSTDPLLTLPAEPGDFTVKLISLEVQQVWINDPQQCLPKRMIRERGLNLRGSPFQFTDDYSLVNYTFFRCPSNLTALSMVPPIKCLNSGVNSGNNSLVVAILSDPPFPTPWTTPCHVISWAMIPIAGVPWLFWTDYYSDIKLEWDNPNCGSCEARGGRCGFVGPTLRDTAFRVGCYDLPTQLQGLSRKTKYGLGIGLGIPGGFCIIVLAYLFYAKMKTYEQQGLSRSDFSTIILPRLPVQTMGLDAASIEKYPKTLLGESGRLPKPNDNLCSICLCEYQPKETLRTIPECNHYFHANCIDGWLKMNATCPLCRNLPERSVSSLTPSIPTSPTH 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151217g00005 398 CDD RING-H2_EL5-like 336 378 - -
Stsc151217g00005 398 Pfam Wall-associated receptor kinase galacturonan-binding 29 97 IPR025287 GO:0030247
Stsc151217g00005 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 382 IPR013083 -
Stsc151217g00005 398 SMART ring_2 336 377 IPR001841 -
Stsc151217g00005 398 SUPERFAMILY RING/U-box 331 380 - -
Stsc151217g00005 398 ProSiteProfiles Zinc finger RING-type profile. 336 378 IPR001841 -
Stsc151217g00005 398 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 381 IPR046948 -
Stsc151217g00005 398 Pfam Ring finger domain 335 378 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151217g00005 Stsc-Chr151217 19859 22055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151217g00005 23 381 C3H Transcription Factor Family AT2G25410 34.584 8.80e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151217g00005 - - adu:107479734 456.062