Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151216g00014 ATGCAGCAACAAAGGCTGAGGCAGCATGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTAACTCCTCCACAGATTGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTTCATGCCGCAGTGTCTATGTAGGAAACATACATCCTCAGGTTTCAGAATCCCTTCTTCAAGAGCTTTTTTCAAGTGCAGGTGCACTTGAAGGGTGCAAGCTCATTAGGAAAGATAAGTCATCTTATGGCTTTGTTGATTACTTCGATCGCAGTGCAGCTGCATTTGCTATTGTAACTCTCAATGGAAGGCACATCTTTGGCCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGACCTTAGCCCTGAGGTTACAGATGCAACCTTGTTTGCTTGTTTCTCTGTCTATCCCACTTGTTCAGATGCGAAGGTAATGTGGGATCAGAAAACAGGTCGGTCCAGGGGATTTGGCTTTGTTTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCCATAAATGATTTAACTGGTAAGTGGCTTGGAAGTAGACAGATACGCTGTAACTGGGCCACTAAAGGGGCTAACAGCAATGATGAAAAGCAGAGTTCAGATTCTAAAAGTGTTGTGGAGTTAACTAATGGAACATCTGAAGAAGCGCAGCAAGTAACCAATGATGATGCACCAGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTCGCTCCGGAG 786 0.4466 MQQQRLRQHAMMQHSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVSESLLQELFSSAGALEGCKLIRKDKSSYGFVDYFDRSAAAFAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPTCSDAKVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANSNDEKQSSDSKSVVELTNGTSEEAQQVTNDDAPEKNPQYTTVYVGNLAPE 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151216g00014 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Stsc151216g00014 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Stsc151216g00014 262 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 261 - -
Stsc151216g00014 262 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Stsc151216g00014 262 Gene3D - 129 236 IPR012677 -
Stsc151216g00014 262 SMART rrm2_1 47 116 IPR003954 GO:0003676
Stsc151216g00014 262 SMART rrm2_1 132 205 IPR003954 GO:0003676
Stsc151216g00014 262 MobiDBLite consensus disorder prediction 209 262 - -
Stsc151216g00014 262 Gene3D - 1 128 IPR012677 -
Stsc151216g00014 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Stsc151216g00014 262 MobiDBLite consensus disorder prediction 209 255 - -
Stsc151216g00014 262 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Stsc151216g00014 262 CDD RRM2_PUB1 130 209 - -
Stsc151216g00014 262 SUPERFAMILY RNA-binding domain, RBD 124 216 IPR035979 GO:0003676
Stsc151216g00014 262 SMART rrm1_1 132 205 IPR000504 GO:0003723
Stsc151216g00014 262 SMART rrm1_1 47 116 IPR000504 GO:0003723
Stsc151216g00014 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151216g00014 Stsc-Chr151216 77512 80454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151216g00014 47 260 Eukaryotic Initiation Factors Gene Family AT3G16380 29.680 6.87e-22 92.8