Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151216g00013 ATGTCGACCTCATCGGAATATTCTGGAGTTTCCGGCCAAAATCCGGTAAAGTCGCCGGAGATATCCACCTTCTCCCAGACTTGTAATCGGTTGAGCCAATACCTAAGGGAAAACCGTTCCTTCGGTGACCTCACCCTCGGCATAACAAAAGGCAACCCCGCCCATGAAACACACGCAGGAGTGTCACCTGAGAATTCATGCCATTCTGCAACAACCATGGAGTTATTTCCCAAAAAGGAAAACAATAATGTGACAACCATGGATCTGCTTTATCCACGTGCTCCTGCTTATGCTCGCCACTCCCCCGAGGAGGACTCAAGTGCATTTAAGGGCGGTAAAGGTGCACAACTGACAATCTTTTATGGTGGTCAAGTCATGGTGTTTGATGACTTCCCTGCTGACAAAGCGGACAAGATTATGTCCTTGGCTAAACAGGGCAACTCCTCTGCATGCCCTTCTACTCACACCTACTTGTTTCAACCCCAATCCACACCTGTTGTTGCTGATCTACCGATTGCAAGGAAGGCATCACTGCATCGCTTCTTGGAGAAGAGAAAGGATAGAATTGCTGCAAAAGCACCATATCAAAGCAGAAATCCCGTGTCGGTCCCTAGTAAAGCACCTGAATCATCGTCTATGGCATGGCTTGGCTTGGCTTAG 660 0.4833 MSTSSEYSGVSGQNPVKSPEISTFSQTCNRLSQYLRENRSFGDLTLGITKGNPAHETHAGVSPENSCHSATTMELFPKKENNNVTTMDLLYPRAPAYARHSPEEDSSAFKGGKGAQLTIFYGGQVMVFDDFPADKADKIMSLAKQGNSSACPSTHTYLFQPQSTPVVADLPIARKASLHRFLEKRKDRIAAKAPYQSRNPVSVPSKAPESSSMAWLGLA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151216g00013 219 Pfam tify domain 114 143 IPR010399 -
Stsc151216g00013 219 ProSiteProfiles Tify domain profile. 110 145 IPR010399 -
Stsc151216g00013 219 MobiDBLite consensus disorder prediction 1 23 - -
Stsc151216g00013 219 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 22 211 IPR040390 -
Stsc151216g00013 219 Pfam Jas motif 171 196 IPR018467 -
Stsc151216g00013 219 SMART tify_2 110 145 IPR010399 -
Stsc151216g00013 219 MobiDBLite consensus disorder prediction 193 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151216g00013 Stsc-Chr151216 74331 75817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151216g00013 23 219 Tify Gene Family AT1G19180 40.598 1.53e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc151216g00013 tify 7.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151216g00013 K13464 - gmx:100527510 215.698