Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151216g00011 ATGGCCGCTGCTCCTCTTCTTTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTTCTCCTCCCTCTCCCTTCTCTCTCCGTCACCAATGCCGAAGCCTTACTCAAACTCAAACAGGCCCTCAACAACCCTCCTGTGCTCTCCTCATGGGCCCCAAACCAGGATCCTTGCGCCCTCCCTGCCCGCTGGGTTGGCGTCCTATGCGCTAAAGACGGCATCATCGGCCTCAACCTCGCCGACATGGGGCTCTCCGGCACCATCGACATCGACGCTCTCTTGCAAATCCCAACCCTCAGGACCATCAGCTTCATCAACAACTCATTCTCCGGGCCCATTCCCGACGTCAACAGGATCGGAGCCCTCAAAGCCATTTACCTCAACACCAACCAATTCTCCGGTTCCATTCCGCCTGATTTCTTCACCAAGTTAGCCTCCTTGAAGAAGCTATGGCTCAACGACAATAAATTCTCCGGTAATATACCCATATCATTGACCAACCTTCGCTTCCTTTCAGAGTTGCGTCTCGACAACAACGCCTTCTCAGGGACACCACCCGCCTTCTCCCAACCCATAAGAATCCTCGACTTTTCCAACAACAAGCTAGAGGGTCAAATACCACCATCCATGGCGGGATTCGAAGCTAGCTCCTTCGCCGGGAATGAAGCTCTCTGCGGGAAGCCCCTCAAGGAATGCGGTGGTGTGGGCGCCGCTTCTTCTGAGCCGGGCAGGTCTGGGGGATTGAGTTGGTTCTGGAAGATCCTGTTTATCCTTCTTGTGGCCACGATTCTGGCGGCAGTGTTCATCTTGGTGAAGAATCGGCGGGAGCAAAGCGAAAACTTCAGCCTGATGAGCAGAGGGAAAAGCCACGTGGACGAGGAAGTAATGCAGGTGAAGGTTGCGAAGAGCGGTAAGGGGACCGGGATCGGAAAGAGAGGAGGTGGAGGGAGAGGGGGGACGGGTGACCTTATAATGGTGAACGACGAGAAGGGCGTGTTTGGGCTCACAGACTTGATGAAGGCCGCAGCGGAGGTGCTGGGGAACGGGGGACTGGGGTCGGCGTACAAGGCGGCCATGGCAAACGGGCTGTCTGTGGTGGTTAAGAGGATGAGAGAGATGAATAAGGTGAGCAGAGACATATTCGACGCTGAGATGAGAAGGTATGGCAGGATCAGAAACCGTAACATCCTCACCCCTCTTGCTTACCATTACCGCAAGGAGGAGAAGCTGTTTGTGACGGAGTACATTCCCAAAGGTAGCTTGCTTTACGTGCTGCATGGCGACAGAGGATCCAGCCACGGGGAACTCACGTGGCCAAGGCGTTTGATTATTGTGAAGGGAATCGCAAAAGGTTTGGCATTTCTTTACAGTGAGTTTTCAACGGAAGAGCTGCCACATGGGAACCTGAAATCCAGCAACATTCTGTTGAGCAACGAGTATGAGGCTCTGCTTAGCGACTATGGATTTCATTCCCTCATGAACCCAAACTACGCCGCTCAAACTTTGTTTGCCTACAAAACTCCTGACTACACCGAATACCAGCAGGTGTCTCAGAAGACCGATGTTTACTGCCTTGGAATCATCATTCTCGAGATCATCACCGGCAAGTTCCCCTCTCAGTATCACAGCAATGGCAAGGGCGGCACTGATGTTGTTCAATGGGTCTCCACCGCCATTTCCGATTCCAGAGAGGCCGAGTTAATCGACCCTGACTTGCTCCATAACAACAACAATTCCGTCTCTCAGATGCTGCAGCTTCTCCACCTCGGGGCTGCTTGCACCGAACCCAACCCCCAACAACAGGGCCTCTTCGTAAGCAGGAGTTCGACTAAGGCTTTAAAGAAAGCGGATTCCGGCGACAAGATCTTGGAATGGCGAGGGGTGGACCTGCAAGGCCACTCCGACGCTCAAGTCAGTAAGGTGTCAGAGAAAAAGAGAGAGATGAGTATGAGAAGGAGAGTAAGAGCATACCTTTACTTGAGCAATGATAGGATTATTTATAGATACAACATTTAA 2010 0.5234 MAAAPLLFFFLFFFFFFFLLPLPSLSVTNAEALLKLKQALNNPPVLSSWAPNQDPCALPARWVGVLCAKDGIIGLNLADMGLSGTIDIDALLQIPTLRTISFINNSFSGPIPDVNRIGALKAIYLNTNQFSGSIPPDFFTKLASLKKLWLNDNKFSGNIPISLTNLRFLSELRLDNNAFSGTPPAFSQPIRILDFSNNKLEGQIPPSMAGFEASSFAGNEALCGKPLKECGGVGAASSEPGRSGGLSWFWKILFILLVATILAAVFILVKNRREQSENFSLMSRGKSHVDEEVMQVKVAKSGKGTGIGKRGGGGRGGTGDLIMVNDEKGVFGLTDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRMREMNKVSRDIFDAEMRRYGRIRNRNILTPLAYHYRKEEKLFVTEYIPKGSLLYVLHGDRGSSHGELTWPRRLIIVKGIAKGLAFLYSEFSTEELPHGNLKSSNILLSNEYEALLSDYGFHSLMNPNYAAQTLFAYKTPDYTEYQQVSQKTDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVSTAISDSREAELIDPDLLHNNNNSVSQMLQLLHLGAACTEPNPQQQGLFVSRSSTKALKKADSGDKILEWRGVDLQGHSDAQVSKVSEKKREMSMRRRVRAYLYLSNDRIIYRYNI 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151216g00011 669 SUPERFAMILY Protein kinase-like (PK-like) 342 598 IPR011009 -
Stsc151216g00011 669 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Stsc151216g00011 669 Gene3D Transferase(Phosphotransferase) domain 1 414 615 - -
Stsc151216g00011 669 ProSiteProfiles Protein kinase domain profile. 338 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151216g00011 669 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Stsc151216g00011 669 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 8 599 IPR046959 -
Stsc151216g00011 669 Pfam Protein kinase domain 342 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151216g00011 669 Gene3D Ribonuclease Inhibitor 192 231 IPR032675 -
Stsc151216g00011 669 FunFam Nuclear pore complex protein NUP107 26 185 - -
Stsc151216g00011 669 Gene3D Phosphorylase Kinase; domain 1 333 413 - -
Stsc151216g00011 669 SUPERFAMILY L domain-like 27 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151216g00011 Stsc-Chr151216 53689 58742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151216g00011 1 599 Receptor kinase-like Gene Family AT3G42880 47.068 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc151216g00011 Pkinase 1.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151216g00011 - - gmx:100816925 783.097