Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151213g00011 ATGGAGAAAGAAGGTCCTGATGGACTTGAAATCACAGAGCTAAGATTAGGTCTTCCCGGTGGGGATTCATCATCACCAGAGAAGAAGAAGAAGAGGGTGTTTTCGGAGATGGATGAGGAAAACAGCTCCACAGATGATGACCGGAAAACAGAAGTGGTGGGGTGGCCACCGGTGTGCTCTTACCGGAAGAAGAATAGTAATAGTAGGTCATCAAAAATGTACGTGAAGGTTAGCATGGACGGTGCTCCATTCTTGCGTAAAATAGATCTTGCCATGCACAAAGGTTACTCTCAATTAGCCTTTGCCTTGGAGAAACTCTTTGGTTGCCATGGAATCACAGAACAAGTTCCCATTTATGAAGACAAAGACGGTGACTGGATGCTCGTCGGAGATGTTCCTTGGCAGATGTTTATTGAATCATGCAAGCGTCTGAGGATTATGAAAAGATCAGATGCAAAGGGCTTCGGTCTGCAACCAAAAGGATCATTAAAGGGATTTATAGAAACAAGTTAG 513 0.4425 MEKEGPDGLEITELRLGLPGGDSSSPEKKKKRVFSEMDEENSSTDDDRKTEVVGWPPVCSYRKKNSNSRSSKMYVKVSMDGAPFLRKIDLAMHKGYSQLAFALEKLFGCHGITEQVPIYEDKDGDWMLVGDVPWQMFIESCKRLRIMKRSDAKGFGLQPKGSLKGFIETS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151213g00011 170 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 153 IPR003311 GO:0005634|GO:0006355
Stsc151213g00011 170 MobiDBLite consensus disorder prediction 24 51 - -
Stsc151213g00011 170 Gene3D - 66 159 - -
Stsc151213g00011 170 ProSiteProfiles PB1 domain profile. 72 151 IPR000270 GO:0005515
Stsc151213g00011 170 SUPERFAMILY CAD & PB1 domains 66 148 - -
Stsc151213g00011 170 Pfam AUX/IAA family 114 155 IPR033389 -
Stsc151213g00011 170 Pfam AUX/IAA family 30 111 IPR033389 -
Stsc151213g00011 170 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151213g00011 Stsc-Chr151213 70351 72329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151213g00011 40 153 B3 DNA Binding Superfamily AT4G23980 34.746 1.53e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc151213g00011 AUX_IAA 2.4e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151213g00011 K14484 - gmx:100811879 243.432