Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151213g00010 ATGAAGAAAGAAAACAATGTAACCTTGAAAGTTGGAGACCTCCCGGTTCGATTGACTCGTGCTCGAGCTGCTGCCTTTCGTGCATCTGGGCAATTGCCTCCTTCAAATGGAGTATCACAACAAAATGAGAAGCAGCTTCTAAAAGGCAATCCCAAAAGAGCTGTTTCAGATAATAATGCCTGCCTTCCATGTAAAAAGAGGCCTGCTCTTCAGGATGTGTCTAACATTTTCTGTGAAACTAAAGGCAGAGGATCTTCCAATGTAACTAAAATTCAGTCTAAGAAAGGCAAGCTGGATAAGGCAGGTCCAATTGGTGCTTCCAAAGTACTTAAAGGGAAGAGTTTGCCACACTTGGGACTTAGATCAGAAGATGGTATGCCCTCATATAATGAAGCACACAATGCACATCTTCGTTTGATTTCTCAAAAGAAAGATGTACAAATTGCTGTAGCCAACAAGAGTGGTATTTATGAGCCTCTAAAGCTATCAAGAAGGCCTTATCCTAAATACATGGAAACAGTACAGCAAGATATAACACAAAGCATGCGTGGGATACTGGTTGATTGGCTTGTAGAGGTCTCTGAGGAGTACAAATTGGTCCCAGATACTCTTTACCTCACTGTATATCTCATAGACTGGTTTCTCTCTAAAACTTACATTGAAAGACGGCGACTTCAGTTACTTGGCATAACCTGCATGCTAATTGCCTCGAAATATGAAGAAATTAATGCCCCACGTATTGAAGAATTCTGCTTCATCACAGACAACACATACACAAAAGAAGAGGTACTAAAAATGGAGACTGAAGTGTTGAAGTTCTCTGCATATCAACTATTTGCTCCCACAACAAAGACTTTCCTCAGGAGGTTTCTTCGGGCAGCACAAGCTTCTTACGAGAGCCCAAACTTGGAATTGGAGTTCCTGGCCAATTATCTTGCTGAACTAACACTCATGAACTATGGTTTCTTAAGTTTCCGTCCTTCTATGATTGCTGCATCTGCTGTATTTCTTGCTAGATGGACTTTAGATCGGTCATGTCATCCATGGAATCCAACTCTTCAACATTATGCCTCTTACAAACCATCAGAGTTGAAAACCACAGTTCTTGCATTACAGGATCTACAGCTGAATAGTAAGGACTTCCCTCTAACTGCGATCCGCACCAAGTACGAGCAAGAGAAGTTCAAATGTGTAGCGGCTTTGTCATCACCTGAATTGCTTGACACACTGTTCTGA 1236 0.4159 MKKENNVTLKVGDLPVRLTRARAAAFRASGQLPPSNGVSQQNEKQLLKGNPKRAVSDNNACLPCKKRPALQDVSNIFCETKGRGSSNVTKIQSKKGKLDKAGPIGASKVLKGKSLPHLGLRSEDGMPSYNEAHNAHLRLISQKKDVQIAVANKSGIYEPLKLSRRPYPKYMETVQQDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVYLIDWFLSKTYIERRRLQLLGITCMLIASKYEEINAPRIEEFCFITDNTYTKEEVLKMETEVLKFSAYQLFAPTTKTFLRRFLRAAQASYESPNLELEFLANYLAELTLMNYGFLSFRPSMIAASAVFLARWTLDRSCHPWNPTLQHYASYKPSELKTTVLALQDLQLNSKDFPLTAIRTKYEQEKFKCVAALSSPELLDTLF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151213g00010 411 Gene3D - 166 279 - -
Stsc151213g00010 411 SMART Cyclin_C_2 281 404 IPR004367 -
Stsc151213g00010 411 MobiDBLite consensus disorder prediction 32 47 - -
Stsc151213g00010 411 Pfam Cyclin, C-terminal domain 281 403 IPR004367 -
Stsc151213g00010 411 Pfam Cyclin, N-terminal domain 164 273 IPR006671 -
Stsc151213g00010 411 FunFam Cyclin A1 268 400 - -
Stsc151213g00010 411 SUPERFAMILY Cyclin-like 162 273 IPR036915 -
Stsc151213g00010 411 SMART cyclin_7 188 272 IPR013763 -
Stsc151213g00010 411 SMART cyclin_7 285 373 IPR013763 -
Stsc151213g00010 411 CDD CYCLIN_AtCycA-like_rpt2 281 395 - -
Stsc151213g00010 411 PANTHER CYCLINS 127 392 IPR039361 -
Stsc151213g00010 411 MobiDBLite consensus disorder prediction 28 55 - -
Stsc151213g00010 411 SUPERFAMILY Cyclin-like 281 406 IPR036915 -
Stsc151213g00010 411 FunFam Mitotic cyclin 6 166 266 - -
Stsc151213g00010 411 Gene3D - 163 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151213g00010 Stsc-Chr151213 58944 61744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151213g00010 1 411 Core Cell Cycle Gene Families AT1G15570 49.049 2.57e-136 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151213g00010 K06627 - gmx:100793657 516.924