Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151213g00009 ATGAGTGGAGCTTCGTTGACAGGGTTGCAAGACCACCTCAAACTCGCAAGAGAATACGCACTCGAAGGACTCTACGACACTTCCGTTATCTTCTTCGACGGCGCCGTTGCTCAGATCAACAAGCACCTAAACACTGTTGAGGATCCGTTAATCCGAGCGAAATGGATGAACGTGAAGAAAGCGCTGTCGGAGGAAACGGAAGTGGTGAAGCAGCTGGATGCGGAGAGAAGGGCATTTAAGGAAACTCCTATTGCCAATGGGAGAAGGCGACCTGCTTCGCCTCCAATCTCCACCAAATCCTCCTTCGTTTTTCAGCCGTTGGATGAATATCCAACTTCTTCATCCAGCGCTTCAGCTGGTCCCTTCGACGATCCCGATGTGTGGAGACCGCCCAGTCGAGATGACAGTAGGGCTGGTAGCGGTAGAAGGCCCGTTGTTTCTTCCCGTGGGCCTACTCGCAAGTCCCCGCAGGATGGGGCTTGGGCCCGTGGCGCCCCTACCAGACCCGCTGCACGCGGTGCCAAGGCTGCTGCTAGAGTTAACTCCGGCGCCCGAGGCGCAACCGCTGCCAAGAAAGGCACTGCTTCTGGAAAATCCAGCAAATCCGATTCAGTTAATGGTGATGGTGATGATGGGAAGACAAAGAAGGGGCAATATGAAGGTCCTGATCCGGACTTGGCCGAAATGCTCGAAAGGGACGTGTTGGAGACATCTCCAGGAGTGAGATGGGATGATGTTGCAGGCCTCACTGAAGCCAAGAGGCTTCTTGAAGAAGCTGTTGTCCTTCCATTATGGATGCCTGAGTATTTCCAGGGTATTAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGTCCTCCTGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCCACTGAATGTGGTACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTNNNNNNNNNNGTGAGAGTGAACGGATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTGTGCAATGCTAGGGGGGCTTCTGGGGAACATGAATCATCCAGAAGGGTAAAGTCTGAACTTCTAGTTCAAGTTGATGGTGTAAACAATAGTTCCACAAATGAAGATGGTACCCGTAAAATCGTAATGGTTTTGGCAGCAACAAACTTCCCTTGGGACATAGATGAGGCACTGAGGCGAAGGCTGGAAAAGCGTATATACATTCCACTTCCGAATTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAAGACTGTAGAGGTGGCCCCTGATGTCAATATAGATGACGTGGCTCGCCGTACAGAAGGCTATAGTGGAGATGATTTGACAAACGTATGTCGTGATGCTTCCTTGAATGGTATGAGGCGTAAGATAGCGGGAAAGACACGCGATGAGATCAAGAACATGCCCAAGGATGAGATTTCAAAGGATCCTGTTGCTATGTGTGATTTTGAGGAAGCTTTGAAGAAAGTCCAGCGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTACTGAATTTGGATCAGCATGA 1587 0.4877 MSGASLTGLQDHLKLAREYALEGLYDTSVIFFDGAVAQINKHLNTVEDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKETPIANGRRRPASPPISTKSSFVFQPLDEYPTSSSSASAGPFDDPDVWRPPSRDDSRAGSGRRPVVSSRGPTRKSPQDGAWARGAPTRPAARGAKAAARVNSGARGATAAKKGTASGKSSKSDSVNGDGDDGKTKKGQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASXXXXESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKVQRSVSQADIERHEKWFTEFGSA 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151213g00009 528 FunFam Katanin p60 ATPase-containing subunit A1 238 429 - -
Stsc151213g00009 528 Pfam ATPase family associated with various cellular activities (AAA) 280 417 IPR003959 GO:0005524|GO:0016887
Stsc151213g00009 528 Gene3D - 3 80 - -
Stsc151213g00009 528 MobiDBLite consensus disorder prediction 80 233 - -
Stsc151213g00009 528 Gene3D - 418 504 - -
Stsc151213g00009 528 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Stsc151213g00009 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 524 IPR027417 -
Stsc151213g00009 528 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 528 IPR028596 GO:0008017|GO:0008568|GO:0051013
Stsc151213g00009 528 SMART AAA_5 276 419 IPR003593 GO:0016887
Stsc151213g00009 528 CDD Kp60-NTD 9 75 - -
Stsc151213g00009 528 Pfam AAA+ lid domain 439 480 IPR041569 -
Stsc151213g00009 528 PANTHER AAA DOMAIN-CONTAINING 25 527 - -
Stsc151213g00009 528 FunFam Katanin p60 ATPase-containing subunit A1 418 504 - -
Stsc151213g00009 528 Gene3D - 238 519 IPR027417 -
Stsc151213g00009 528 MobiDBLite consensus disorder prediction 204 233 - -
Stsc151213g00009 528 ProSitePatterns AAA-protein family signature. 389 408 IPR003960 GO:0005524|GO:0016887
Stsc151213g00009 528 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151213g00009 Stsc-Chr151213 51375 54530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151213g00009 232 520 Calmodulin-binding Proteins AT3G56690 38.983 6.62e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151213g00009 K07767 - qsa:O6P43_018084 816.224