Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151212g00013 ATGGATCATGATGATGAGTATATTCAAGCATCAAAAGGGAAGAATGTTGAAAGTGTCACATCTTCAGAACTAGCACTACCACAGACCAAAAATGTTAAGAGGAAAAAGAGCAAGATAGTGAACAAGAGAAGGTTCAGTGATGAGCAAATTAGATTACTTGAGTGCATATTTGAGTCAGAATCCAAGCTTGAGCCAAGGAAGAAGATTCAGCCTAGGCAAGTTGCTATATGGTTTCAGAACAGAAGGGCAAGGTGGAAATCAAAACGGATAGAGCAAGAATATAGGAAGCTTAAAAGATGA 300 0.3833 MDHDDEYIQASKGKNVESVTSSELALPQTKNVKRKKSKIVNKRRFSDEQIRLLECIFESESKLEPRKKIQPRQVAIWFQNRRARWKSKRIEQEYRKLKR 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151212g00013 99 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 33 99 IPR045224 GO:0003700
Stsc151212g00013 99 SUPERFAMILY Homeodomain-like 31 88 IPR009057 -
Stsc151212g00013 99 CDD homeodomain 42 89 IPR001356 GO:0003677
Stsc151212g00013 99 MobiDBLite consensus disorder prediction 1 33 - -
Stsc151212g00013 99 Gene3D - 28 97 - -
Stsc151212g00013 99 ProSiteProfiles 'Homeobox' domain profile. 58 88 IPR001356 GO:0003677
Stsc151212g00013 99 SMART HOX_1 38 92 IPR001356 GO:0003677
Stsc151212g00013 99 MobiDBLite consensus disorder prediction 13 28 - -
Stsc151212g00013 99 Pfam Homeodomain 42 86 IPR001356 GO:0003677
Stsc151212g00013 99 Coils Coil 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151212g00013 Stsc-Chr151212 64011 64310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151212g00013 13 99 Homeobox Transcription Factor Family AT2G46680 51.579 4.95e-24 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc151212g00013 Homeodomain 9.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151212g00013 K09338 - gmx:100793260 132.494