Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151212g00007 ATGGATAAGCAGGTAGCGCCCCTTCTCCTCATCGTCCTCCTCTTCACTATTTTGGTCTCTGATACTGAATCAGCATCGTGCCCCTTTGATCTCAACTACGTTGACACCTTACCATGGGACACATCAACGTGCAGAGACCCAATCGACACACAACACTGCTGCCAAACCCTGCTCAGTCTTATCGGCATCGGACTCTCTCAGCACCTCAAACAAACCTCCCAGTTCCAACTCCCGGATATTAATACTTCCACGTCTTGCTTAACTGAATTCAGATCCAAGCTTTCACCCTTGCTGCTGAACACATCAATGGTGTCCACATGCTTCCCGAACTCGTATTTCGTGTCGAATTCTTCGAGTTGTGCCGGGATTGAGAACATCCAAGATTGGAAGCTGAAAGCGGGTTTAACGACCCCGCTGGACAATTCTTGCAGTGGCGACATAAGTGGCCAATCGCAGTGCAGCATTTGCACCGACGCCGGATTCAAGGTCACTGCAGACTTGAACCAAAAGGATCCAAATTCGACCAAATGCTTCTACTTCACAATCTTGTATGCTGCTGGTATTGTTAACAAGCTTGGTCCAAGCAATTTGGGCACGGCCTCTTGCATTCTAGGCTTGCCACTCTCCACGAAGAAAGGCTCTTGGAATAAGGAAAAGGTTTTGAGATTGGTTTTTGGGATATTGGGTGCTCTTGGTGGTGTTATTCTAGCTTTGGTTCTGATTGTTTTGTATAGGAAGTGGGATAGGCGGAGGAGGGAGAACCTTTATCACAGGTCGATCGAAAACAGCGTTAGGGACAGCGTTTTGCCTAACGCTGGAGCGAAATGGTTTCATATATCGGAGCTTGAACGAGCCACCAACAAGTTTTCGCAGAGGAATATGATTGGTCAAGGTGGTGATGGGGTAGTGTACAAGGGGACTCTTTCAGACGGCACTTTGGTTGCGGTTAAAGAGATTCTGAACTTGGAAAGCAAAGGGGATGAGGAGTTTGGCTATGAGGTAGACATCATAAGCAAAATAAAACACAGGAATCTTCTTGCTCTCCGAGGTTGTTGCGTTACGAGCGATAATTTGAAAGGTAAGAGGAGGTTTCTGGTGTATGATTATATGCCTAATGGCAGCCTCAGTTACCAATTGTCCATTGCTGGTGCTAATAGGCTAACATGGCCACAGAGGAAGAGCATAATTCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTACGAAATCAAACCCCCAATTTATCACCGTGACATCAAAGCCACCAACATACTTCTTGACTCAAAGATGAAAGCAAAAGTGGCGGATTTCGGGTTGGCGAAGCAGGGCAGTGAAGGCCAATCTCACCTCACAACAAGGGTGGCTGGCACATACGGTTATCTAGCCCCAGAGTACGCTCTATACGGCCAACTAACAGAGAAGAGTGATGTGTATAGCTTTGGAATTGTAATTTTAGAGATTATGAGTGGGAGGAAGGTACTAGACACCACGAACTCGAATTCAAACGTGGTTTTGATCACGGATTGGGCGTGGACGCTCGCAAAATCAGGATGGACGGAGGAGATTCTTGATGAGTCAATAAGGGGAGAAGGACCAGAGAAGATCATGGAAAGGTTTGTTCTTGTTGGGATTCTTTGTGGTCATGCAATGGTGGCGCTTAGGCCTACCATTGCTGAGGCAATGAAGATGTTGGAAGGTGATATTGAGATTCCTCAGTTGCCAGACAGGCCAGTACCACTGGGTCATGAGTCGTTTCAATCTTCTCTTCTCTTTGGATTGCAAAGAAGTGGAAGGTCCACGCCATATCTCTCATCTTATGCAACAAGTATCACCACTACAAGCACACTGTAG 1851 0.4662 MDKQVAPLLLIVLLFTILVSDTESASCPFDLNYVDTLPWDTSTCRDPIDTQHCCQTLLSLIGIGLSQHLKQTSQFQLPDINTSTSCLTEFRSKLSPLLLNTSMVSTCFPNSYFVSNSSSCAGIENIQDWKLKAGLTTPLDNSCSGDISGQSQCSICTDAGFKVTADLNQKDPNSTKCFYFTILYAAGIVNKLGPSNLGTASCILGLPLSTKKGSWNKEKVLRLVFGILGALGGVILALVLIVLYRKWDRRRRENLYHRSIENSVRDSVLPNAGAKWFHISELERATNKFSQRNMIGQGGDGVVYKGTLSDGTLVAVKEILNLESKGDEEFGYEVDIISKIKHRNLLALRGCCVTSDNLKGKRRFLVYDYMPNGSLSYQLSIAGANRLTWPQRKSIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVADFGLAKQGSEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTTNSNSNVVLITDWAWTLAKSGWTEEILDESIRGEGPEKIMERFVLVGILCGHAMVALRPTIAEAMKMLEGDIEIPQLPDRPVPLGHESFQSSLLFGLQRSGRSTPYLSSYATSITTTSTL 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151212g00007 616 Gene3D Phosphorylase Kinase; domain 1 251 369 - -
Stsc151212g00007 616 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 119 584 - -
Stsc151212g00007 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Stsc151212g00007 616 SUPERFAMILY Protein kinase-like (PK-like) 274 580 IPR011009 -
Stsc151212g00007 616 Pfam Protein kinase domain 291 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151212g00007 616 ProSiteProfiles Protein kinase domain profile. 289 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151212g00007 616 Gene3D Transferase(Phosphotransferase) domain 1 370 578 - -
Stsc151212g00007 616 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 370 572 - -
Stsc151212g00007 616 CDD STKc_IRAK 295 566 - -
Stsc151212g00007 616 Pfam SPARK 23 178 IPR043891 -
Stsc151212g00007 616 SMART serkin_6 289 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151212g00007 616 FunFam Receptor-like serine/threonine-protein kinase At4g25390 254 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151212g00007 Stsc-Chr151212 34901 37210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151212g00007 16 586 Receptor kinase-like Gene Family AT1G11050 53.571 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Stsc151212g00007 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151212g00007 - - gmx:100820563 921.383