Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151211g00008 ATGGCCAAATCCAACACTACTAGTAGCAAAAACACAACCTTAACACCAAAACCAACATGGGTTTTGCCTTATAGGACAAAGAATCTGAATGAAGTCTACACTCTAGGAAGGAAACTGGGTCAGGGCCAATTTGGAACCACATACCTTTGCACACACAAGATCACAGGCTACAAATATGCCTGCAAATCAATCCCAAAGAAGAAGCTTTTCTGCAAAGAGGACTATGATGATGTTTGGAGGGAGGTTCAGATAATGCACCATTTATCTGAGCACCCTAATGTGGTGAGGATCCATGGAACCTATGAGGACATCTCAAATGTTCATCTGGTTATGGAGGTTTGTGAGGGTGGTGAGTTGTTTGATAGGATTGTGAAGAAGGGTCAATACAGTGAGAGAGAGGCTGCAAAGGTTATTAAGACCATTGTTGAGGTTGTTGAGTCTTGCCACTCTCTTGGGGTCATGCATAGAGACCTCAAGCCTGAGAATTTCTTGTTTGATAGTGTTGAAGAAGATGCTAAGCTTAAAGCCACTGATTTTGGTTTGTCTGTGTTCTACAAACCAGGTGAATCTTTTACTGATGTTGTTGGAAGCCCTTACTATGTGGCGCCGGAAGTCCTGCGAAAACATTACGGACCGGAGTTAGACGTGTGGAGTGCCGGCGTTATCTTGTACATCTTACTAAGTGGAGTGCCACCATTCTGGGCAGAAACTGAGCAAGGGATCTTCAAGCAGATTTTAATGGGAAAACTTGATTTCCACTCTGAGCCATGGCCTAGCATCTCCGACAGCGCGAAGGATCTAATCCGGAAAATGCTCGACCGAAATCCGAAAACAAGGCTCACAGCTCATCAAGTACTTTGTCACCCGTGGATCGTTGATGACAATATTGCGCCGGATAAACCTCTTGATTCTGCTGTCTTATCGCGCCTGAAGCAGTTCTCTGCAATGAATAAACTTAAGAAGATGGCGCTGCGCGTCATTGCTGAGAGGCTCTCCGAGGAAGAAATCGGTGGTCTGAAAGAGTTGTTTAAGATGCTTGATGCAGACAATAGTGGAACCATAACATTTGAAGAGCTAAAAGTTGGCTTAAAGAAAGCTGATATTGATAACAGTGGAACAATTGACTATGGTGAATTCATTGCTGCTACTGTTCACTTGAATAAGCTTGAGAGAGAGGAAAACCTGTTGTCAGCATTCTCTTATTTTGACAAAGATGGAAGTGGCTACATAACCATTGATGAGATTCAACAAGCTTGTAAGGAGTTTGGTTTGGTTGATGTCCACCTTGATGAAATGGTCAAGGAAATTGATCAAGACAATGATGGACAGATAGATTATGGCGAATTTGCTGCCATGATGAGAAAGGGAAATGCAGGCGGAGCAATCGGACGACGAACTATGAGAAGCACACTCAATTTCAGAGATGCTCTGGGAATCCCAAGAGATGGGTCTGATCAAGCTGCTGATGATCAACTTCAGTAA 1482 0.4352 MAKSNTTSSKNTTLTPKPTWVLPYRTKNLNEVYTLGRKLGQGQFGTTYLCTHKITGYKYACKSIPKKKLFCKEDYDDVWREVQIMHHLSEHPNVVRIHGTYEDISNVHLVMEVCEGGELFDRIVKKGQYSEREAAKVIKTIVEVVESCHSLGVMHRDLKPENFLFDSVEEDAKLKATDFGLSVFYKPGESFTDVVGSPYYVAPEVLRKHYGPELDVWSAGVILYILLSGVPPFWAETEQGIFKQILMGKLDFHSEPWPSISDSAKDLIRKMLDRNPKTRLTAHQVLCHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMLDADNSGTITFEELKVGLKKADIDNSGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKEFGLVDVHLDEMVKEIDQDNDGQIDYGEFAAMMRKGNAGGAIGRRTMRSTLNFRDALGIPRDGSDQAADDQLQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151211g00008 493 FunFam Calcium-dependent protein kinase 1 35 118 - -
Stsc151211g00008 493 Gene3D - 302 457 - -
Stsc151211g00008 493 FunFam Calcium-dependent protein kinase SK5 201 296 - -
Stsc151211g00008 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Stsc151211g00008 493 FunFam CDPK-related kinase 3 25 193 - -
Stsc151211g00008 493 SUPERFAMILY EF-hand 330 454 IPR011992 -
Stsc151211g00008 493 ProSitePatterns Protein kinases ATP-binding region signature. 39 67 IPR017441 GO:0005524
Stsc151211g00008 493 ProSitePatterns EF-hand calcium-binding domain. 347 359 IPR018247 -
Stsc151211g00008 493 Pfam Protein kinase domain 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151211g00008 493 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 449 - -
Stsc151211g00008 493 Gene3D Phosphorylase Kinase; domain 1 35 118 - -
Stsc151211g00008 493 ProSiteProfiles EF-hand calcium-binding domain profile. 334 369 IPR002048 GO:0005509
Stsc151211g00008 493 Gene3D Transferase(Phosphotransferase) domain 1 119 301 - -
Stsc151211g00008 493 FunFam Calcium-dependent protein kinase SK5 388 485 - -
Stsc151211g00008 493 SMART efh_1 338 366 IPR002048 GO:0005509
Stsc151211g00008 493 SMART efh_1 428 456 IPR002048 GO:0005509
Stsc151211g00008 493 SMART efh_1 394 422 IPR002048 GO:0005509
Stsc151211g00008 493 SUPERFAMILY Protein kinase-like (PK-like) 18 310 IPR011009 -
Stsc151211g00008 493 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Stsc151211g00008 493 Pfam EF hand 339 365 IPR002048 GO:0005509
Stsc151211g00008 493 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151211g00008 493 SMART serkin_6 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151211g00008 493 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Stsc151211g00008 493 CDD STKc_CAMK 32 290 - -
Stsc151211g00008 493 Pfam EF-hand domain pair 393 454 IPR002048 GO:0005509
Stsc151211g00008 493 ProSiteProfiles EF-hand calcium-binding domain profile. 428 459 IPR002048 GO:0005509
Stsc151211g00008 493 CDD EFh 395 454 IPR002048 GO:0005509
Stsc151211g00008 493 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151211g00008 Stsc-Chr151211 50172 52999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151211g00008 21 490 EF-hand Containing Proteins AT4G09570 74.438 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc151211g00008 Pkinase 1.7e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151211g00008 K13412 - gmx:100805961 859.366