Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151211g00001 ATGAAAGAACATTGCATGGAGCCTTTTTTTGTTTTTCAGGTTTTCTGCGTAGGTCTCTGGTGTTTGGATGAATATTGGTATTACAGTTTGTTCACTCTATTTATGCTTTTTATGTTTGAGTCAACCATGGCAAAGAGTCGGTTGAAGACTCTTACTGAGTTAAGGCGTGTCAGAGTGGATAGTCAGATCCTTATGGTACATCGTGGTGGCAAGTGGGTTAAACTCTCTGGTACGGATCTTTTGCCTGGCGATGTTGTCTCTATAGGACGCTCCTCTGGTCAGAATGGCGAGGAGAAGTCTGTACCTGCAGACATGCTTATATTGGCTGGAAATGCAATTGTGAATGAAGCTATTCTCACAGGCGAGTCTACTCCTCAATGGAAGGTTTCAATTATGGGTAGGGGAAGTGAGGAGAAGCTGTCCATAAGGCGAGATAAAAGTCACGTCTTATTTGGTGGAACTAAAATACTGCAGCACACTCCGGATAAGACCTTCCCTCTAAAAACTCCTGATGGTGGCTGTGTCGCTGTTGTGCTTAGAACGGGGTTTGAAACAAGTCAAGGAAAGTTGATGCGAACAATCTTGTTCTCCACAGAAAGGGTAACTGCCAATAGCTGGGAAAGTGGATTGTTCATCTTATTCTTGGTTGTATTTGCTCTGATTGCTGCTGGTTATGTGCTTATGAAGGGGTTAGAAGATCCCACAAGAAGCAAGTACAAACTTATACTAAGTTGTTCACTTATTGTTACTTCTGTGATACCTCCTGAGTTGCCAATGGAGTTATCAATAGCCGTTAATACTTCCCTGATTGCATTGGCACGACGCGGTATTTTTTGCACAGAGCCTTTCCGAATACCATTTGCTGGAAAGGTTGATATATGTTGTTTCGACAAGACTGGGACACTGACATCTGATGACATGGAATTTTCTGGAGTTGTTGGATTGAATGGAACCACTGACTTGGAATCTGATATGAGTAGAGTGCCAGTGCGAACTGTGGAAATCCTGGCTTCTTGCCATGCTCTGGTATTTGTCGATAATAAGCTGGTTGGTGATCCTCTTGAGAAGGCTGCACTTAAGGGAATTGATTGGGGTTATAAATCTGATGAGAAGGCTGTTCCAAAAAAGGGTAGTGGCCAACCTGTCCAAATTGTACAGCGGTACCATTTTGCATCTCACTTAAAACGAATGGCAGTTATTGTTCGCATTCAGGAGGAGTTTTTTGCCTTTGTGAAGGGTGCCCCAGAAATTATTCAAGATAGACTCATTGATGTACCACTGTCATATGTTGAAACCTATAAGAAGTATACACGTCAAGGGTCTCGTGTTCTTGCTTTGGCCTACAAGTCTCTCCCTGACATGACAGTCAGTGAAGCCAGAGGCTTGGATAGGGATGTAGTAGAGAGTGGACTTACTTTTGCTGGTTTTGTGGTATTTAATTGTCCTATAAGGTCAGATTCGGCTGTTGTTTTATCTGAACTGAAAGCGTCTTCACATGACTTGGTGATGATTACTGGTGACCAAGCTTTGACTGCTTGCCATGTTGCGAGCCAAGTTCATATTATATCAAAACCTACCTTGATCCTTGGCCCAGCGAGTAATGGTGTGGGATATAAATGGATGTCCCCTGATGAGACTGTAAACATTCCCTACAGTGAGAAAGAGGTTGAGTCTTTATCAGAATCTCATGATCTCTGTGTTGGAGGTGATTGCTTTGAAATGTTGCAACAGTCATCGGCTCATCTTCGAGTTATTCCTTATGTGAAGGTGTTTGCTAGAGTTGCACCTGAACAGAAAGAACTTATCCTGACCACTTACAAGACAGTGGGACGTATAACTCTTATGTGTGGTGATGGAACCAATGATGTTGGGGCATTGAAACAGGCCCATGTAGGAGTTGCTCTTCTGAATGCAATGCCTCCAACTCAAAGTGGAAACTCCTCTAAAGAATCAGCTGGGGAAGAAAGTTCAAAATCGGTCAAAACGAAGAAATCCAAGCCTGCACTAGAAGCACCTGGAAAGAGTGGAGAAGGAACTTCAAAAGCCACAGTTGCTTCAAAATCAGATCCTATCAACCGTCATCAGGCAGCTGTTGATATGCAACGACAGAAGCTCAAGAAGATGTTTGAAGAGCTTAATGAGGAAGATGGCCGCGCACCTGTTGTCAAGCTTGGTGATGCGTCAATGGCATCCCCCTTCACTGCAAAGCACGCATCTGTTGCACCCACCACGGACATAATTCGTCAAGGTCGGAGTACCCTGGTGACAACCCTCCAGATGTTTAAGATTTTGGGGCTCAACTGCCTTGCTACCGCATACGTGTTGAGTGTCATGTATCTGGACGGCGTCAAACTAGGTGATGTGCAGGCCACAATAAGTGGTGTCTTTACTGCTGCTTTTTTCCTCTTTATCTCACATGCCCGCCCTCTTCCCACACTCTCGGCCGAACGTCCACACCCGAATATCTTCTGTGCTTATGTTTTCCTTTCCCTTATGGGGCAATTTGCCATTCACTTATTCTTCCTGATCTCATCTGTGAAAGAGGCTGAAAAATACATGCCAGATGAATGCATTGAACCAGATGCAGATTTCCATCCCAACTTGGTCAACACTGTTTCGTACATGGTCAGTATGATGCTTCAGGTTGCTACTTTCGCCGTGAACTACATGGGCCATCCCTTCAACCAGAGTATCTCAGAAAACAAGCCATTCCGGTATGCCCTTATAGCCGCTGTTGTTTTCTTTACAGCGATCACATCTGATGTCTTCAGGGACTTAAATGACTGGTTGAAGCTGGTGCCACTACCAGTGGGATTAAGAGACAAACTATTAATATGGGCATTTCTAATGTTTTTGATATGCTACTCATGGGAGAGACTATTGAGGTGGGCCTTCCCTGGTAAGATCCCTGCTTGGAAGAAGCGCCAACGGCACGCTGTATCTAACTTGGAAAAGAAGAAAGAGGCTTAA 2970 0.4421 MKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRGGKWVKLSGTDLLPGDVVSIGRSSGQNGEEKSVPADMLILAGNAIVNEAILTGESTPQWKVSIMGRGSEEKLSIRRDKSHVLFGGTKILQHTPDKTFPLKTPDGGCVAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVLMKGLEDPTRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLNGTTDLESDMSRVPVRTVEILASCHALVFVDNKLVGDPLEKAALKGIDWGYKSDEKAVPKKGSGQPVQIVQRYHFASHLKRMAVIVRIQEEFFAFVKGAPEIIQDRLIDVPLSYVETYKKYTRQGSRVLALAYKSLPDMTVSEARGLDRDVVESGLTFAGFVVFNCPIRSDSAVVLSELKASSHDLVMITGDQALTACHVASQVHIISKPTLILGPASNGVGYKWMSPDETVNIPYSEKEVESLSESHDLCVGGDCFEMLQQSSAHLRVIPYVKVFARVAPEQKELILTTYKTVGRITLMCGDGTNDVGALKQAHVGVALLNAMPPTQSGNSSKESAGEESSKSVKTKKSKPALEAPGKSGEGTSKATVASKSDPINRHQAAVDMQRQKLKKMFEELNEEDGRAPVVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPLPTLSAERPHPNIFCAYVFLSLMGQFAIHLFFLISSVKEAEKYMPDECIEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENKPFRYALIAAVVFFTAITSDVFRDLNDWLKLVPLPVGLRDKLLIWAFLMFLICYSWERLLRWAFPGKIPAWKKRQRHAVSNLEKKKEA 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151211g00001 989 CDD P-type_ATPase_cation 1 904 IPR047820 -
Stsc151211g00001 989 SFLD Haloacid Dehalogenase 276 752 - -
Stsc151211g00001 989 SUPERFAMILY Calcium ATPase, transduction domain A 62 194 IPR008250 -
Stsc151211g00001 989 FunFam Cation-transporting ATPase 291 475 - -
Stsc151211g00001 989 FunFam Cation-transporting ATPase 476 651 - -
Stsc151211g00001 989 Gene3D - 291 475 IPR023299 GO:0000166
Stsc151211g00001 989 SFLD p-type atpase 276 752 IPR044492 -
Stsc151211g00001 989 ProSitePatterns Hypothetical cof family signature 2. 616 638 - -
Stsc151211g00001 989 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 966 IPR023298 -
Stsc151211g00001 989 Gene3D - 31 195 - -
Stsc151211g00001 989 PRINTS P-type cation-transporting ATPase superfamily signature 295 309 - -
Stsc151211g00001 989 PRINTS P-type cation-transporting ATPase superfamily signature 115 129 - -
Stsc151211g00001 989 PRINTS P-type cation-transporting ATPase superfamily signature 497 507 - -
Stsc151211g00001 989 PRINTS P-type cation-transporting ATPase superfamily signature 616 635 - -
Stsc151211g00001 989 Pfam E1-E2 ATPase 65 275 - -
Stsc151211g00001 989 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 965 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Stsc151211g00001 989 NCBIfam HAD-IC family P-type ATPase 210 316 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc151211g00001 989 NCBIfam HAD-IC family P-type ATPase 588 636 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc151211g00001 989 ProSitePatterns E1-E2 ATPases phosphorylation site. 297 303 IPR018303 -
Stsc151211g00001 989 MobiDBLite consensus disorder prediction 638 693 - -
Stsc151211g00001 989 Coils Coil 691 715 - -
Stsc151211g00001 989 MobiDBLite consensus disorder prediction 639 653 - -
Stsc151211g00001 989 MobiDBLite consensus disorder prediction 654 670 - -
Stsc151211g00001 989 Pfam haloacid dehalogenase-like hydrolase 292 520 - -
Stsc151211g00001 989 NCBIfam P-type ATPase of unknown pump specificity (type V) 1 946 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Stsc151211g00001 989 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 301 485 IPR023299 GO:0000166
Stsc151211g00001 989 FunFam Cation-transporting ATPase 33 195 - -
Stsc151211g00001 989 Gene3D - 476 651 IPR023214 -
Stsc151211g00001 989 SUPERFAMILY HAD-like 290 642 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151211g00001 Stsc-Chr151211 10199 18635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151211g00001 1 988 Primary Pumps ATPases AT5G23630 79.536 0.0 1621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151211g00001 K14950 - gmx:100789385 1783.07