Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151209g00006 ATGGACCCAGTTGCAGCACAAGGAAGACCTCTACCACCTCCTTTTCTCACTAGAGACCTTCATCTACACCCTCACCACCAATTCCAACAACACCACAATCTCAACAACAACAACCAAAACTCCGATTTGGATGACCAAAACCGTGGCCAAAAACGTGACCGCGGCGACGACCAGAACCCCGCCACTCCTCCTTCCACTGGAGACGGCAAGGATCCGCACTCCGGCGGAGGAGAATCCGGCGAGATCTCGAGGAGACCGAGGGGGAGACCGGCAGGGTCCAAGAACAAGCCTAAGCCACCGATCATCATCACAAGGGACAGTGCAAATGCTTTAAGATCTCATGTCATGGAAGTTGCAAACGGTTGTGACATCATGGAGAGTGTCACCGTCTTCGCGCGGCGGCGCCAGCGCGGTGTTTGTATCCTCAGCGGCAGTGGAACAGTCACCAACGTCACTCTCCGGCAGCCGGCTTCGCCGGGTGCCGTCGTAACCCTACATGGTAGGTTTGAGATTCTATCCCTGTCCGGATCATTCCTGCCGCCGCCGGCCCCGCCTGCAGCGTCAGGACTAGCCATATATCTGGCTGGCGGACAGGGACAGGTAGTAGGTGGGAGCGTGGTGGGCCCACTTTTGGCAGCCGGCCCAGTGGTGATCATGGCGGCCTCCTTTGGCAATGCAGCCTACGAGAGATTGCCTTTAGAAGAAGAGGAGTCTGTCCCCGTCTCGGGAGGAGGCGGGGGACTAGGCTCCCCAGGAATTGTAGGACAACAACCTCAGCCACAGTCGCAGCCACAACAACTAGTGGGAGGAGATCCCAATAGTTCATCAATGTTCCATGGTGGTGGAGTGCCTCAAAATCTCCTTAATTCTTGCCAATTGCCAGCTGAAGGTTTTTGGGGTGGTGCTGCCGCCGGTGCACGCCCTCCCTTTTAA 933 0.5681 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQQHHNLNNNNQNSDLDDQNRGQKRDRGDDQNPATPPSTGDGKDPHSGGGESGEISRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLAAGPVVIMAASFGNAAYERLPLEEEESVPVSGGGGGLGSPGIVGQQPQPQSQPQQLVGGDPNSSSMFHGGGVPQNLLNSCQLPAEGFWGGAAAGARPPF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151209g00006 310 Pfam Plants and Prokaryotes Conserved (PCC) domain 112 224 IPR005175 -
Stsc151209g00006 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 287 IPR014476 GO:0003680
Stsc151209g00006 310 MobiDBLite consensus disorder prediction 254 283 - -
Stsc151209g00006 310 ProSiteProfiles PPC domain profile profile. 108 245 IPR005175 -
Stsc151209g00006 310 MobiDBLite consensus disorder prediction 237 283 - -
Stsc151209g00006 310 MobiDBLite consensus disorder prediction 74 88 - -
Stsc151209g00006 310 MobiDBLite consensus disorder prediction 29 44 - -
Stsc151209g00006 310 MobiDBLite consensus disorder prediction 1 102 - -
Stsc151209g00006 310 PIRSF ESCAROLA 16 310 IPR014476 GO:0003680
Stsc151209g00006 310 SUPERFAMILY AF0104/ALDC/Ptd012-like 108 237 - -
Stsc151209g00006 310 CDD DUF296 112 179 IPR005175 -
Stsc151209g00006 310 FunFam AT-hook motif nuclear-localized protein 111 238 - -
Stsc151209g00006 310 Gene3D - 111 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151209g00006 Stsc-Chr151209 76290 78078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151209g00006 1 300 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 64.263 7.33e-89 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151209g00006 - - gmx:100816243 344.354