Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151209g00003 ATGAGTATAAACACTAGTTGTAGCGGAAGCCCTAGTGGCGGCGGCGGAAACAGTAGTGGCAGCGGAGGCAGCGGTGGCGGTGGCCCTTGTGGGGCTTGCAAATTCTTAAGAAGAAAGTGTGTGCAAGGTTGTATATTTGCACCCTACTTTGATTCGGAGCAAGGTGCCACACATTTTGCGGCGGTTCACAAGGTTTTTGGCGCTAGCAATGTTTCAAAGCTTCTACTAAATATTCCAGTTCATAAGAGACTTGATGCTGTTGTCACCATTTGTTATGAAGCTCAAGCAAGGCTTAGAGACCCTGTCTATGGCTGCGTTGCTCATATCTTTGCTCTTCAACAACAGGTAGTGACTTTACAAGCAGAACTTACATATTTACAAGGTCATCTTGCAACTCTTGAATTACCTCATCCACCACAACCACCTCCTTCTCCACCGCAACCAACCCTAGGTCCTCCGACTCTCTCAATCTCTGATCTCCCACCTCCACCTCCTACTCCTGCCACCACCACTGCAGTGCCGGCCACATATGATTTGTCTTCCCTCTTTGAACCCATGGCCCAAACTTCTTGGGCCATGCAACATAGGCCCGCTGATGTACCACGCCAATTTTTTAGTGGCGGCACATCAACATCTTTACCGTCTAGTGGTGCTGGTGGTAGTGGTGGTGGCGATCTTCAAACGCTGGCTCACGAGCTTTTGCGTAGACATGGATCTGATCCTCCAACATGTTCTAGTGCACCCTCATCACATTCTCATTCAAAATGA 768 0.487 MSINTSCSGSPSGGGGNSSGSGGSGGGGPCGACKFLRRKCVQGCIFAPYFDSEQGATHFAAVHKVFGASNVSKLLLNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVTLQAELTYLQGHLATLELPHPPQPPPSPPQPTLGPPTLSISDLPPPPPTPATTTAVPATYDLSSLFEPMAQTSWAMQHRPADVPRQFFSGGTSTSLPSSGAGGSGGGDLQTLAHELLRRHGSDPPTCSSAPSSHSHSK 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151209g00003 255 Pfam Lateral organ boundaries (LOB) domain 29 126 IPR004883 -
Stsc151209g00003 255 PANTHER LOB DOMAIN CONTAINING PROTEIN 26 137 - -
Stsc151209g00003 255 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
Stsc151209g00003 255 MobiDBLite consensus disorder prediction 135 170 - -
Stsc151209g00003 255 MobiDBLite consensus disorder prediction 134 172 - -
Stsc151209g00003 255 MobiDBLite consensus disorder prediction 204 222 - -
Stsc151209g00003 255 MobiDBLite consensus disorder prediction 1 24 - -
Stsc151209g00003 255 MobiDBLite consensus disorder prediction 200 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151209g00003 Stsc-Chr151209 32793 37408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151209g00003 31 255 AS2 family AT2G45420 59.565 1.83e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc151209g00003 LOB 4.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151209g00003 K21994 - rvl:131332295 276.944