Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151208g00009 ATGGGCACCACCACGACACCCGTTAACGCCTTGCTTTTACTCATGCTATCTACTTTCTTGCTTTACTTCCCATGCTTCTCTGTCGGCAAAAATGAGACTGATCGGCGGCAAACACAAGTATCGGAGATTATCATAGCGGGAGGCGGCGGTTATTATCCTGGCCCCGCTCCGCCACCCGAATGTCCTCCTCCCCCTCCTCCTCCCGTACCAGAGTGTCCCACTCCATCTTCTCCGCCGCCGCCACCACCACCACCACCTCCGCCTCCGCCTCCGCCTCCGCCACTACCAGCCTGTCCCACACCATCTCCACCACCTCCTCCTCCTCCTTCTCCTCCTCCTCCACCACCACCACCGACACGGTTGACAAGAGCACGAGGAGCACTTCTAAAATTCAAGAAATTTGATATCGTTGACAAAACAGGGTACACTAATAACTGGAAAGGCTCAGATCCATGCAAGTACAATGGGATAAGGTGCGCCATATATCCAAACTCAAAGCAGCTAGCTGTGGCCGGAATAGACCTCAACCAAGCCCAAATCACCGGCGTTAAAAACGGAACATTGAAGCTTTCCGGTATCTTGGGTGAAATTCCAGAGCTCACATTCTTCCACGTTAACTCCAACGGCTTCGAAGGAAACGTCCCAGACATATCCGTTAAAAAGTTCAAATATTTCTACGAACTTGATCTCAGCAACAACAGGCTCTCGGGTGTGTTCCCGATGCAAGTTCTTGAGGCCACCAATCTAACATTCTTGGACATTAGGTTCAACCAACTCTTCGGCCCCATTCCACCAAAACTCTTCCTTCAAGATCTCGATGTTATTTTCATCAACAACAATTACTTCTCTGGCAACCTCCCACGTAATTTCGGGTCAACTCCTGCCAGGTACCTCACGTTCGCCAACAATCAATTTACTGGAACGATTCCAAACAGCATTGGTAAAGCTTCCAAGACGCTAACGGAAGTGCTCTTCTTGGGGAACAAGCTAGAAGGATGCCTTCCCTACGAGATAGGGTTGCTCAGCAAGGCAACAGTTTTTGATGCGAGCAAGAACGCCATTAGGGGTCCCATTCCACACTCTCTTGGGTGCTTAAAAAGCATTCAGTTCCTCAACTTCGCAAGCAACCAGCTGTACGGTGCAGTTCCGGAGACGGTCTGCACGCTCCCCGGGCTCCGCAACAACGGCAACTTGTCCTTATCAGACAACTACTTCACCCAAGTTGGTCCTGAGTGCTTGAAGCTGATAGAGAGCAAGGTTCTTGACGTCAACAGAAACTGCATCTTGGGGCTTCCTAATCAAAGATCACCGGAAGAGTGCCACGTGTTCTTTTCCAATGTGAAACCATGTCCTAACCCCAAATCTTTTAATTACATCCCTTGCAAAACGGACTACTCGAAATTGCAGTCCACCGAAGTTGCGGTGCCGCCGCTTCAAGAAGCTGGTTCTTCCTACTCTTCACCGCCTGCGCCGGTAACCTATAAGGCTCTTAGACCTCATCGCTTTTGA 1509 0.5023 MGTTTTPVNALLLLMLSTFLLYFPCFSVGKNETDRRQTQVSEIIIAGGGGYYPGPAPPPECPPPPPPPVPECPTPSSPPPPPPPPPPPPPPPPPLPACPTPSPPPPPPPSPPPPPPPPTRLTRARGALLKFKKFDIVDKTGYTNNWKGSDPCKYNGIRCAIYPNSKQLAVAGIDLNQAQITGVKNGTLKLSGILGEIPELTFFHVNSNGFEGNVPDISVKKFKYFYELDLSNNRLSGVFPMQVLEATNLTFLDIRFNQLFGPIPPKLFLQDLDVIFINNNYFSGNLPRNFGSTPARYLTFANNQFTGTIPNSIGKASKTLTEVLFLGNKLEGCLPYEIGLLSKATVFDASKNAIRGPIPHSLGCLKSIQFLNFASNQLYGAVPETVCTLPGLRNNGNLSLSDNYFTQVGPECLKLIESKVLDVNRNCILGLPNQRSPEECHVFFSNVKPCPNPKSFNYIPCKTDYSKLQSTEVAVPPLQEAGSSYSSPPAPVTYKALRPHRF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151208g00009 502 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 119 474 - -
Stsc151208g00009 502 SUPERFAMILY beta-sandwich domain of Sec23/24 53 121 - -
Stsc151208g00009 502 Pfam Leucine rich repeat N-terminal domain 125 159 IPR013210 -
Stsc151208g00009 502 Gene3D Ribonuclease Inhibitor 296 448 IPR032675 -
Stsc151208g00009 502 PRINTS Proline rich extensin signature 96 117 - -
Stsc151208g00009 502 PRINTS Proline rich extensin signature 63 79 - -
Stsc151208g00009 502 PRINTS Proline rich extensin signature 83 95 - -
Stsc151208g00009 502 PRINTS Proline rich extensin signature 47 59 - -
Stsc151208g00009 502 MobiDBLite consensus disorder prediction 54 121 - -
Stsc151208g00009 502 MobiDBLite consensus disorder prediction 54 122 - -
Stsc151208g00009 502 SUPERFAMILY L domain-like 142 431 - -
Stsc151208g00009 502 Gene3D Ribonuclease Inhibitor 122 295 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151208g00009 Stsc-Chr151208 73495 76013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151208g00009 120 445 Leucine-rich Repeat extension Gene Families AT4G13340 44.954 2.12e-80 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151208g00009 - - ahf:112800345 689.493