Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151206g00005 ATGGCGAAAACGTCGTCGTTACTTCTCTGCTCTCTTCTCCTCTTTGCAACCCTAGCTCTAATCCAGGCGAAGAAGGATTTGAAAGAAGTGACGCACAAGGTTTACTTTGATGTCGAGATTGACGGACAGCCTGCAGGTCGAATTGTGATGGGCCTTTTTGGAAAGACAGTTCCTAAGACAGCAGAAAACTTTCGAGCTCTTTGCACAGGTGAGAAGGGAACTGGAAAAAGTGGAAAGCCTCTTCATTACAAAGGTAGCTCATTCCATAGGATCATACCTAGCTTTATGATCCAGGGAGGTGATTTTACACATGGGAATGGAATGGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGACGAGAACTTTAAGATAAAGCACACTGGACCAGGACTTCTATCAATGGCAAATGCTGGTCCTGATACCAATGGTTCACAGTTCTTCATTACTACTGTTACAACTAGCTGGTTGGACGGAAGGCATGTTGTTTTCGGAAAGGTGCTTTCTGGAATGGATGTTGTGTACAAGATTGAAGCTGAAGGGAAACAAAGTGGCACCCCAAAGAGCAAGGTCACAATTGTTGACAGTGGTGAACTACCTCTATAA 606 0.4406 MAKTSSLLLCSLLLFATLALIQAKKDLKEVTHKVYFDVEIDGQPAGRIVMGLFGKTVPKTAENFRALCTGEKGTGKSGKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKIKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGKQSGTPKSKVTIVDSGELPL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151206g00005 201 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 159 174 IPR002130 GO:0000413|GO:0003755
Stsc151206g00005 201 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Stsc151206g00005 201 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 52 67 IPR002130 GO:0000413|GO:0003755
Stsc151206g00005 201 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 88 100 IPR002130 GO:0000413|GO:0003755
Stsc151206g00005 201 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 158 IPR002130 GO:0000413|GO:0003755
Stsc151206g00005 201 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 198 IPR002130 GO:0000413|GO:0003755
Stsc151206g00005 201 CDD cyclophilin_ABH_like 32 197 - -
Stsc151206g00005 201 PIRSF Peptidylpro_ismrse 16 200 IPR024936 GO:0003755
Stsc151206g00005 201 FunFam Peptidyl-prolyl cis-trans isomerase 27 200 - -
Stsc151206g00005 201 SUPERFAMILY Cyclophilin-like 29 199 IPR029000 -
Stsc151206g00005 201 Gene3D - 20 200 IPR029000 -
Stsc151206g00005 201 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 33 199 - -
Stsc151206g00005 201 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 36 196 IPR002130 GO:0000413|GO:0003755
Stsc151206g00005 201 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 83 100 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151206g00005 Stsc-Chr151206 28903 31900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151206g00005 46 196 U-box Gene Family AT5G67530 41.830 1.49e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151206g00005 K01802 - gmx:100792140 365.54