Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151206g00002 ATGAAGACAACAACACCACCCTCTTATTATTACTACACACACTCTTTCTTCTTCTTCTTCTTATTAACCGTCATTCTCATCCTAACCGCCGCAAATGCTCTCGGCTCCGCATCCACCACCGCCGTCATCTCCGCCTCGTCCACAGTCTGCGCCGTAGTTGCCGGCGAGCCCAAACAATTCATCCAGTGCTACCAACAAAACCAGCAGAGCAATTATTATTCATATGCAGATGTTGCACCGGTGGTTGAGGTGCTTCCACGCGTCTCCTTTGAGTCCATCTCCGGCGGTCGGAGCTTCTTCTGCGGGCTCCGTTCCGGTGGCCTCAGCCTCATCTGCTGGGACGTGGATGATGGAGCATCGGTGCTCGTGCCGAAGAGGATCTACCACAGTGACGTGGTGCAGTTAACCGATCTAACTGTTGGTGATTCTCAGGTTTGTGCCAGAGAGTCGCAATCTGGTGTGGTGAGGTGTTGGAGAGGAGGTAGTGATGAAAATGGATTCAAGTTTCATTCTCCTAGCAAGGATCTTAGGTTCAAAAGCATCACTTCAGCTTCTGATTTTTCTTGTGGGGTGTCAATGAATAATGGAAAAGTTCGTTGTTGGGGTAACAACAATGGTAGTGAAATTCAAGCACAATTTGGGAACATTTCTATGTCAAATTTGGTTGCTGGGGTGTCACATGTTTGTGGGTTAACAATGTATGATGGGATCTTAATTTGCAAGGGAAACAATGATTCAGGTCAATTGGGTCCTAACATTTTAAATTCAAGTTCTTATTATCAAGAGTTTTCAGGACTTGCATTGGGAGAAGATTTCACTTGTGCTATTAAAAGAAGAAATGGACTTGTCCAATGTTGGGGTGGTGAAGATACCAAAAAGTTTGATTCTTTTAGTAATATATCCTTTGAGTCAATTGTTGCTGGCTTGGATTTTGTTTGTGGGGTAACAACCATGAATCTATCTCTGATTTGTTGGGGTCCTGGTTGGTCTAATAATAATGGTAGTACTAATAATTACGAGATTCCATTGGGAATTGTTCTTCCTAGTCCTTGTGTTAGAGGTGGTTGTGATTCTTCTTGTGCTTCATATCCAAATTCTGATTACTTGTGTCATGGTTCTGGAACTATTTGCTATTCATGCCAGGACAATCAAATTCCACTAGCTGTGCCATTGATTCCACCACCATCACCATTACCATCAACACAAGCTTCTAATTTACATCACAAAAACATTAGGGTGATTTTGGTAATTTTGATTGTTGGATCAGTTGGTTCTTTTGCTGGTCTATGCACTATTCTTTATTTCCTTTGGGTTGGAGCTAAAAGACTACTCTTCAAGAAGAAAAATGTTGATAATTCAGAGCAACCTCAGAGAACTGATGATTCTGATGGTGATGGCTATGTTGACTTAGCTCCAATGCCGCCGAATCGGGCATCGAATATAACATCATTAGGATCATTGAGGAAGTATCGGAGTGTGGGTAGTTCATCATCAAAGCACAACTTGGATAAGATTGAGAATTTTTCATTACATGAGTTAGTTATAGCCAGTAACGATTTTTCAAATGATAACAAGATAGGCTCTGGAAGCTTTGGCTCTGTATACAAAGGGAAGCTAGCCGATGATTGCGAAGTTGCTATCAAGAGAGGAGAAATTGTTAGCACAAGGAAGAAGAAGAAGTTTCAAGAGAAAGAGATTGCATTCGATTGTGAGTTGTCATTATTATCAAGACTTCACCACAAGCATCTTGTGAGGCTAATTGGCTTCTGTGAGGAGGATGAAGAGAGGCTCTTGGTTTATGAGTACATGAGCAATGGATCAATCCATGAGCATTTACATAACAAGAACAATAATGTTAAAAAAAGTAGTAGTATTTTGAATTCTTGGAAGATGAGGATCAAGATTGCATTGGATGCTGCTAGAGGGATTGAGTACCTTCATAACTATGCTGTTCCACCAATTATCCATAGAGATATCAAATCCTCAAATATACTATTGGATTCAAATTGGAATGCTAGGGTTTCCGATTTCGGATTGTCACTTATTTGGCCGGAGACAGAACAAGATTCAACGCCTGCAAGGGCAGTCGGCACAGTTGGTTACATAGATCCAGAATACTATGAATTGAATGTGTTAACTACAAAAAGTGATGTGTATGGTTTAGGAGTGGTTATGTTGGAGCTTCTAACAGGAAAAAGAGCTGTATTTAAATTAGATGATGAAAATAATAAGTTTAATAGTCCTGTGGGAATAGTGGAATATGCAAATCCAAGAATAGCAAAAGGGGAATTATGGAGTATTTTGGACTGCAGAATTGGAAAACCTAATGTTAATGAGGTTGAAGCTCTTAAGATTATGGGTTTTCTTGCTATGCATTGTGTGAATTTAAATGGGAAGGAAAGGCCTGAAATGACTGAAATTGTTGCCAATTTAGAGAGAGCGTTGAGTTTTTTGGAGGGTAGTTCTAATAATACCAGTCCCTCTATTGCTTCATGTTCCAATACATTTGTACTCTAA 2517 0.4033 MKTTTPPSYYYYTHSFFFFFLLTVILILTAANALGSASTTAVISASSTVCAVVAGEPKQFIQCYQQNQQSNYYSYADVAPVVEVLPRVSFESISGGRSFFCGLRSGGLSLICWDVDDGASVLVPKRIYHSDVVQLTDLTVGDSQVCARESQSGVVRCWRGGSDENGFKFHSPSKDLRFKSITSASDFSCGVSMNNGKVRCWGNNNGSEIQAQFGNISMSNLVAGVSHVCGLTMYDGILICKGNNDSGQLGPNILNSSSYYQEFSGLALGEDFTCAIKRRNGLVQCWGGEDTKKFDSFSNISFESIVAGLDFVCGVTTMNLSLICWGPGWSNNNGSTNNYEIPLGIVLPSPCVRGGCDSSCASYPNSDYLCHGSGTICYSCQDNQIPLAVPLIPPPSPLPSTQASNLHHKNIRVILVILIVGSVGSFAGLCTILYFLWVGAKRLLFKKKNVDNSEQPQRTDDSDGDGYVDLAPMPPNRASNITSLGSLRKYRSVGSSSSKHNLDKIENFSLHELVIASNDFSNDNKIGSGSFGSVYKGKLADDCEVAIKRGEIVSTRKKKKFQEKEIAFDCELSLLSRLHHKHLVRLIGFCEEDEERLLVYEYMSNGSIHEHLHNKNNNVKKSSSILNSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDSNWNARVSDFGLSLIWPETEQDSTPARAVGTVGYIDPEYYELNVLTTKSDVYGLGVVMLELLTGKRAVFKLDDENNKFNSPVGIVEYANPRIAKGELWSILDCRIGKPNVNEVEALKIMGFLAMHCVNLNGKERPEMTEIVANLERALSFLEGSSNNTSPSIASCSNTFVL 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151206g00002 838 Gene3D - 30 217 IPR009091 -
Stsc151206g00002 838 CDD STKc_IRAK 526 813 - -
Stsc151206g00002 838 SUPERFAMILY RCC1/BLIP-II 75 290 IPR009091 -
Stsc151206g00002 838 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 215 822 IPR044815 GO:0004674
Stsc151206g00002 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Stsc151206g00002 838 Gene3D Transferase(Phosphotransferase) domain 1 603 828 - -
Stsc151206g00002 838 MobiDBLite consensus disorder prediction 450 481 - -
Stsc151206g00002 838 ProSiteProfiles Protein kinase domain profile. 520 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151206g00002 838 Pfam Protein kinase domain 521 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151206g00002 838 SUPERFAMILY Protein kinase-like (PK-like) 497 811 IPR011009 -
Stsc151206g00002 838 FunFam Serine/threonine-protein kinase-like protein CCR4 603 829 - -
Stsc151206g00002 838 SMART serkin_6 520 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151206g00002 838 Gene3D - 221 349 IPR009091 -
Stsc151206g00002 838 MobiDBLite consensus disorder prediction 450 465 - -
Stsc151206g00002 838 FunFam Somatic embryogenesis receptor kinase 1 490 602 - -
Stsc151206g00002 838 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Stsc151206g00002 838 Gene3D Phosphorylase Kinase; domain 1 491 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151206g00002 Stsc-Chr151206 6376 10518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151206g00002 13 831 Receptor kinase-like Gene Family AT3G55950 48.633 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc151206g00002 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151206g00002 - - ahf:112792254 1273.46