Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151205g00009 ATGGACCCGGAGAAGGTGAAGAAACAGCTTGCTTTAACTGTGAGAAGCATTCAATGGAGCTATGCAATCTTTTGGTCTAACTCACCTACCCAACCAGGGGTGTTGAGCTGGGGTGAAGGTTATTACAATGGAGACATCAAGACTAGAAAGACAAGCCAAGTAGCAGAACATAATAACTCTGATGAGATAATAAGCTTGCAGAGAAGTGAGCAGCTGAGAGAGCTATACTCGTCCCTCGCAGACTCGAAATCATGCTCGCAGACGAAAAGGCCATCGGCGGCACTGTCCCCTGAAGATCTCACAGATACTGAGTGGTTCTACTTGGTTTGCATGTCATTTGTGTTCAACATTGGCCAATGTTTACCTGGAAGATCACTGGTGTATGGTCAACCTATTTGGCTGTGCAATGCTCATTCTGCTGATAATGGAGTTTTCTGTCGCTCACTACTTGCTAAGACAGTTGTGTGCTTTCCCTTTCTGGATGGGGTTATTGAGCTTGGTACAACTGATCCGGTCTCTGAAGACTACAGTCTTATTCAGGTGATAAGGAATTCTTTCTTGGATATTCTTGAAACCAACCTTCCAAATAACTCAGGAGTTACTTTGAACACAAGAAACAAGGAAGAAGGTGGTGTTGCATGTGGAGCAGTTGAACATAATGCTTATGGTCTAACTCCAGAAATAATAGGAGATGAACTGATCAACATAACTTCTCCTACTACCAGTTCAAATGCATTAAAAGTCAACCAACCAACAGTGGGAAGAACAACCTTCACAACTGAATTCAGCAACTGTTTTCCTAACTCCATGAATTCTAGTTGTGATTGTTTGTCCCAAAATCCTTGTGCACAGGACCTTCAACAATGCAATAATAATCCAGAATCAATCTTGGTGGATCTTGGAAGCGACGATAAGCATTATCAGAGGCTACTCTCTGCCCTTCCAAGACGCCCTGATGATGACCGGTTCATCATGGGATTGCATCATCGAAATTTTCGTGGGGAATCGAGCTTTGCCATTTGGAAGGAACTAGGATCAGTGGATTGTAAAAGATCAAGAGGAGGAGGAACACCACAAGAGTTATTAAAGAAGGTATTGTTTGAAGTTCCTCTGATGCACATGGATGGATTGCTGGAGTCTCAAGAAAAGAATGGCTCCAAAGACAGAATGGGACTACAAGAGGTACATGATGTTGGCATGAACCATGCTTTGACAGAAAGAAAGAGAAGAGCAAAACTAAACGAAAGGTTTTTAATTCTAAGATCAATGGTGCCTACAATTAGTAAGGATGACAAAGTCTCAATACTAGATGATGCCATGGAATACCTTAGAAAACTTGAGGAAAAGGTAAGAGAGTTAGAAGCCAAAAAGGATGTAATAGATTTTGATGGTATAGTAAGTACAAGAACATCTCAGGATATGGGGGAAAGGACTTCTGATACTAATGGCAACAAAAATTCGAAGTCGGTGTCAAACAAGAGGAGGGCTTGGGAGGCTGCTGGTGATGAAGAGATGAACAATCCAGATATTGATGTTGAAATCTATGTGAGTGAGAGTGAAGTTGTGATTGAAATGAAGTGCCCTTGGAGAGAAGGAGTTCTGCTGGAAACTGTGGAAGCACTTAGCAGCCTCCATTTAGATTGTCATTCACTTCAGTCATCAGAATCTCATGGGAATCTCTATCTCACAATTAAATCTAAGTTCAGAGGACCAAATAATGTTGCAGCAGTAAAAAGGATTAAACACACACTCCAAAAAGCGGCTATGAAGAGTTGA 1776 0.4167 MDPEKVKKQLALTVRSIQWSYAIFWSNSPTQPGVLSWGEGYYNGDIKTRKTSQVAEHNNSDEIISLQRSEQLRELYSSLADSKSCSQTKRPSAALSPEDLTDTEWFYLVCMSFVFNIGQCLPGRSLVYGQPIWLCNAHSADNGVFCRSLLAKTVVCFPFLDGVIELGTTDPVSEDYSLIQVIRNSFLDILETNLPNNSGVTLNTRNKEEGGVACGAVEHNAYGLTPEIIGDELINITSPTTSSNALKVNQPTVGRTTFTTEFSNCFPNSMNSSCDCLSQNPCAQDLQQCNNNPESILVDLGSDDKHYQRLLSALPRRPDDDRFIMGLHHRNFRGESSFAIWKELGSVDCKRSRGGGTPQELLKKVLFEVPLMHMDGLLESQEKNGSKDRMGLQEVHDVGMNHALTERKRRAKLNERFLILRSMVPTISKDDKVSILDDAMEYLRKLEEKVRELEAKKDVIDFDGIVSTRTSQDMGERTSDTNGNKNSKSVSNKRRAWEAAGDEEMNNPDIDVEIYVSESEVVIEMKCPWREGVLLETVEALSSLHLDCHSLQSSESHGNLYLTIKSKFRGPNNVAAVKRIKHTLQKAAMKS 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151205g00009 591 PANTHER TRANSCRIPTION FACTOR TT8 3 587 - -
Stsc151205g00009 591 Gene3D - 395 461 IPR036638 GO:0046983
Stsc151205g00009 591 Coils Coil 436 463 - -
Stsc151205g00009 591 Pfam Helix-loop-helix DNA-binding domain 401 447 IPR011598 GO:0046983
Stsc151205g00009 591 MobiDBLite consensus disorder prediction 471 501 - -
Stsc151205g00009 591 MobiDBLite consensus disorder prediction 471 490 - -
Stsc151205g00009 591 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 400 459 IPR036638 GO:0046983
Stsc151205g00009 591 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 397 446 IPR011598 GO:0046983
Stsc151205g00009 591 SMART finulus 403 452 IPR011598 GO:0046983
Stsc151205g00009 591 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 186 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151205g00009 Stsc-Chr151205 38811 41664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151205g00009 3 588 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 40.639 8.43e-136 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151205g00009 bHLH-MYC_N 2.8e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151205g00009 - - gmx:100808167 584.334