Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151205g00006 ATGGGTGCTTGCTGTTGCTGTTCTTCCAAGGACACTGATTTGACTGCTCAAAACACCTACTACTATTACCCAAGAGTATCAGAGGACCATGTCCCATTATCATCATCAAATCATGCTGCTGCTGGAGGTCTCTTAGTTGGCACTAGCCCAGACGCTTCAATTCCTGATACTTACACACCACCACCTGCTCCTACACCTTTCAATGTCACATTAGCTCCCAATCCAACTCTACCTCACAAAACTAATAATAATAATAATAATGAGGCCTCACCCAAGTTGGAACACCTCAAGGAATCAGGCCTCAAACTGCTAGAACCTATCATCTTACACCAAGAGGATGAGGATGCCTGCCCAATTTGCTTAGAAGAGTATGATGCAGAGAATCCAAAACTCACCACAAAATGTCATCACTATTTCCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGTCCTGTATGTGATCAGCCACAGGATATGCTTTTGAACCCTCTCATCATTGACTGA 516 0.4341 MGACCCCSSKDTDLTAQNTYYYYPRVSEDHVPLSSSNHAAAGGLLVGTSPDASIPDTYTPPPAPTPFNVTLAPNPTLPHKTNNNNNNEASPKLEHLKESGLKLLEPIILHQEDEDACPICLEEYDAENPKLTTKCHHYFHLACILEWMERSETCPVCDQPQDMLLNPLIID 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151205g00006 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 163 IPR013083 -
Stsc151205g00006 171 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 35 160 - -
Stsc151205g00006 171 SMART ring_2 117 157 IPR001841 -
Stsc151205g00006 171 Pfam Ring finger domain 116 157 IPR001841 -
Stsc151205g00006 171 SUPERFAMILY RING/U-box 110 164 - -
Stsc151205g00006 171 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151205g00006 Stsc-Chr151205 19430 20473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151205g00006 1 159 C3H Transcription Factor Family AT5G41350 41.667 2.87e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151205g00006 - - adu:107488151 224.557