Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151203g00008 ATGTGGGATCTCAACGACTCACCCGATCGGAGGAGGAGAAAGGGCGAGGAACAATCCGAAGAAGGTTGCTCTTCTCTCAAGAGAGTTGGATCTGTTTCCAATTCATGCTCCTCCGCAGTTCTCATCGAAGACGGATCAGAAGAAGAAGAACAAGAACCAGAGGAAGAAGACGTAAGCATCGTGAGAGCAACAACAGCGACGAAGAAGAGTAGAAGAAGCAAGATATTTGGCTTCTCAGTAACCCACGGTGATGACGATGACGACGGTTACGGTGACGATGAAGATGAAGATGAAGATGAACAGTCCATGGATAGTGAGAACCACCGCCAGCAGGTAGTGACTCGGCAGTTTTTCCCCGCCGCATCATCACCAGCCGGCGGCGGCGGTGACGGTGACGGTGACGGTGATGGCGGTGGCTGTAGTTTTCCTCGTGCTCACTGGGTAGGTGTGAGATTCTGCCAATCGGAGGCACTCGGTGGTGGAAAATTATCAGTGGAAGTTTCTTCTTCTTCTCAGTCCATGAAGAAGAGTCGGCGAGGACCAAGGTCGAGAAGCTCACAGTACAGAGGGGTCACTTTTTACCGAAGAACCGGTCGATGGGAGTCTCATATTTGGGACTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACTGCACATGCAGCTGCTCGTGCATACGATAGAGCGGCGATTAAGTTCCGAGGAGTAGAGGCAGACATAAACTTCAACATTGAAGACTACGGTGAAGACTTGAAGCAGATGAGCAATCTGACTAAGGAAGAGTTTGTGCACGTTCTTCGCCGACAAAGCACTGGGTTTCCAAGAGGAAGCTCTAAATATAGAGGTGTAACTTTGCACAAATGTGGAAGATGGGAAGCTCGAATGGGACAATTTTTAGGGAAAAAGTACGTCTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCCTATGATAAAGCAGCAATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGAAAAAGAGCTTAATAATTCTGAATCCAGAGGTAATGCTGCAGATCACAATCTAGATTTAAGTTTGGGAAATTCAAGCTTCAAATCTAGCAACAATAATCAAGCATCATCGGGGAATCATACCACAAATGTTCAAGATCATCAGCAGCAGCACATGCCATCTGAATCCAATTGGCGAAATGGTGCAAGCAAGCCTAAGCTGGTGAATATCCTACCAAAACCGTGCAATAGAAACATGGAAGCACATGGAGGAAGGGATTTACACGGAGAGAGTGAAGCCTTGAGGATGCTGAGTCAAACTCACATCCATTCTTCAACTTCAACTTCTTCTTCATCAGCATCTATTGAAATGCAAAGATATGGACCCTACAGGTCCCTAGGGGAGCCTCAAGTGCTTCACAATTTTGCACATCTTCAACCACCAAATTTTTATTTCCCCAGCAGCAGCAGTAGTAATGGAGGTCGTGTAGGGAATGATCTTTCATTATCATCAATGGTGGATCATCATCAACAATCTGGACCTCCACATTATCACTATTTGGCCACTGCTGCAGCATCATCAGGATTCCCACCACACATTATCAGACCCTCTTCTCATCACCAAGCTTGGCTGCAGAAAAATAATGGCTTCCACACACTCATGAGACCCCCCTAA 1674 0.4659 MWDLNDSPDRRRRKGEEQSEEGCSSLKRVGSVSNSCSSAVLIEDGSEEEEQEPEEEDVSIVRATTATKKSRRSKIFGFSVTHGDDDDDGYGDDEDEDEDEQSMDSENHRQQVVTRQFFPAASSPAGGGGDGDGDGDGGGCSFPRAHWVGVRFCQSEALGGGKLSVEVSSSSQSMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYGEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEKELNNSESRGNAADHNLDLSLGNSSFKSSNNNQASSGNHTTNVQDHQQQHMPSESNWRNGASKPKLVNILPKPCNRNMEAHGGRDLHGESEALRMLSQTHIHSSTSTSSSSASIEMQRYGPYRSLGEPQVLHNFAHLQPPNFYFPSSSSSNGGRVGNDLSLSSMVDHHQQSGPPHYHYLATAAASSGFPPHIIRPSSHHQAWLQKNNGFHTLMRPP 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151203g00008 557 Gene3D AP2/ERF domain 278 337 IPR036955 GO:0003700|GO:0006355
Stsc151203g00008 557 Gene3D AP2/ERF domain 186 245 IPR036955 GO:0003700|GO:0006355
Stsc151203g00008 557 SUPERFAMILY DNA-binding domain 278 338 IPR016177 GO:0003677
Stsc151203g00008 557 CDD AP2 278 338 IPR001471 GO:0003700|GO:0006355
Stsc151203g00008 557 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 108 443 - -
Stsc151203g00008 557 MobiDBLite consensus disorder prediction 346 403 - -
Stsc151203g00008 557 MobiDBLite consensus disorder prediction 86 102 - -
Stsc151203g00008 557 MobiDBLite consensus disorder prediction 1 108 - -
Stsc151203g00008 557 CDD AP2 187 244 IPR001471 GO:0003700|GO:0006355
Stsc151203g00008 557 MobiDBLite consensus disorder prediction 164 187 - -
Stsc151203g00008 557 SUPERFAMILY DNA-binding domain 186 244 IPR016177 GO:0003677
Stsc151203g00008 557 Pfam AP2 domain 278 327 IPR001471 GO:0003700|GO:0006355
Stsc151203g00008 557 Pfam AP2 domain 187 235 IPR001471 GO:0003700|GO:0006355
Stsc151203g00008 557 ProSiteProfiles AP2/ERF domain profile. 279 336 IPR001471 GO:0003700|GO:0006355
Stsc151203g00008 557 SMART rav1_2 187 249 IPR001471 GO:0003700|GO:0006355
Stsc151203g00008 557 SMART rav1_2 279 342 IPR001471 GO:0003700|GO:0006355
Stsc151203g00008 557 FunFam AP2-like ethylene-responsive transcription factor 186 245 - -
Stsc151203g00008 557 MobiDBLite consensus disorder prediction 24 41 - -
Stsc151203g00008 557 MobiDBLite consensus disorder prediction 119 138 - -
Stsc151203g00008 557 PRINTS Ethylene responsive element binding protein signature 318 338 IPR001471 GO:0003700|GO:0006355
Stsc151203g00008 557 PRINTS Ethylene responsive element binding protein signature 280 291 IPR001471 GO:0003700|GO:0006355
Stsc151203g00008 557 MobiDBLite consensus disorder prediction 1 23 - -
Stsc151203g00008 557 ProSiteProfiles AP2/ERF domain profile. 187 243 IPR001471 GO:0003700|GO:0006355
Stsc151203g00008 557 MobiDBLite consensus disorder prediction 346 409 - -
Stsc151203g00008 557 FunFam AP2-like ethylene-responsive transcription factor 278 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151203g00008 Stsc-Chr151203 75748 81501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151203g00008 1 366 AP2-EREBP Transcription Factor Family AT4G36920 63.926 3.64e-130 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc151203g00008 AP2 3.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151203g00008 K09284 - gmx:100792442 638.647