Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151202g00001 ATGGACACAATAAGAATCCATGAATCTGTAAGGCAAGTTGATTTTTCACCGTCAATGAGACGGAACTTATTTGAGAGGCATAGTACTTCGGTTCCTCAAGTAAATTATGGTAAATCCGTTAACAAAGATCTAGATGGAGATCTAAACGATGGATATAATTGGAGGAAATATGGAGAGAAAGAGGTGAAAGGAGGCGAAAATCCCCGGTATTATTATAGGTGCACACAACCAAATTGCACAATGAAAAAGAAAGTTGGAAGAAACTCGAATGGAGACGTTATCGAAGTTATTTACAAGGGAAGCCACAACCATCCCAAGCCTTGGAAACCTCTTGAAAAACTTCAATCACTTGATGCACTTACACCACTCACCAACCCAAGGAACATGAGTCAACAATCCACACGAGAGCAAGATCTTAATCGTATTATCGAGCAAGCATCACAAATAACAAGTCATCCTAGACGAGGCGATGAAGATCAACTTGAAGCTCACGCCAAAAGATTGAAAGGAGTGAGTGAAGTGTATAGCTATTGCTTTTATCCAATTGGGGGCAAACCTATCAAAGAACCCAGAGTTATAGTTCAAACTACAACTGAAATTGATATTCTTGATGATGGCTATAGGTGGAGGAAATATGGCCAGAAAATTGTCAAGGGTAACCCAAACCCTAGG 672 0.3988 MDTIRIHESVRQVDFSPSMRRNLFERHSTSVPQVNYGKSVNKDLDGDLNDGYNWRKYGEKEVKGGENPRYYYRCTQPNCTMKKKVGRNSNGDVIEVIYKGSHNHPKPWKPLEKLQSLDALTPLTNPRNMSQQSTREQDLNRIIEQASQITSHPRRGDEDQLEAHAKRLKGVSEVYSYCFYPIGGKPIKEPRVIVQTTTEIDILDDGYRWRKYGQKIVKGNPNPR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151202g00001 224 Gene3D WRKY domain 190 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc151202g00001 224 ProSiteProfiles WRKY domain profile. 198 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151202g00001 224 ProSiteProfiles WRKY domain profile. 48 107 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151202g00001 224 FunFam WRKY transcription factor 35 108 - -
Stsc151202g00001 224 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 27 224 IPR044810 GO:0003700
Stsc151202g00001 224 SMART WRKY_cls 48 106 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151202g00001 224 Pfam WRKY DNA -binding domain 204 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151202g00001 224 Pfam WRKY DNA -binding domain 49 105 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151202g00001 224 Coils Coil 224 224 - -
Stsc151202g00001 224 Gene3D WRKY domain 37 108 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc151202g00001 224 SUPERFAMILY WRKY DNA-binding domain 48 107 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc151202g00001 224 SUPERFAMILY WRKY DNA-binding domain 195 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151202g00001 Stsc-Chr151202 670 1488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151202g00001 50 224 WRKY Transcription Factor Family AT2G38470 48.768 5.95e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc151202g00001 WRKY 1.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151202g00001 K13424 - gmx:100127367 199.519