Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151200g00010 ATGACAAATAATCCTTACTACTGCTCCAATGGTTATTGGTTCGACCTTAATTCTCCCACTACCTCCTACCTTTTTTCTTCTTCTTCTTCTAATAATAATAATAATAATAACCTACCAGCTCTTTTGTATGGCCACCACCAGCAGCAGCAGCAGCAGCACCAAATATCATCGTCTCCGCCGAGACGAGAAGCTCTTCCTCTGCTTAATAACCTAAGCCCTACAACAAGGAGACCTCATCAAGAAGATCTGGAATCTTCCTTTGGTGCCATGGAAGTCAAGGAGCTGCAGGACAAACAACAACAACAAGCGCTGAGTATATCATTATCATGTAGCTCCATGGATGATGAGGAGAGTGTCACGGTGGCTTTACACTTAGGGCTTCCATCATCAGGAGCAACAAGTAATAATAACACCACCACATGTGAAGAGGTGTCAGTAGTATCAGTATCACAAGAACAAGAACAAGAAGGAATAGGAGGAGGTTCTTCATCTTCAGTAGAGTATGGATCAAATAGCAGATCAATGATGATGAATAGAGGCCAGTATTGGATCCCAACACCAGCTCAGATTCTGATTGGTCCAACACAATTCTCTTGCCCCCTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGGAAGGGGCCAGAATCCCTAAGAGGAACACAACCAACAGCAATGCTAAGGCTTCCATGCTATTGCTGTGCACCAGGGTGTAAGAACAACATTGATCATCCAAGAGCCAAGCCTCTCAAAGATTTCAGAACCCTCCAGACACATTACAAGAGGAAGCATGGAATCAAGCCTTTCATGTGCAGGAAATGCTGCAAGGCGTTTGCTGTTAGAGGTGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTCTGGTATTGTTCTTGTGGATCTGATTTCAAGCATAAGAGGTCTCTCAAGGATCATATCAAGGCCTTTGGGAATGCTCACAAGCCTTATGGGATTGATTCTCTTGATCATGATGATAATGAACCTGATGGCTCTGAGATTGACCAAGAAAATGATCTTTCTAATTCTACTACTACTCATCATCATAACACTTAA 1110 0.4315 MTNNPYYCSNGYWFDLNSPTTSYLFSSSSSNNNNNNNLPALLYGHHQQQQQQHQISSSPPRREALPLLNNLSPTTRRPHQEDLESSFGAMEVKELQDKQQQQALSISLSCSSMDDEESVTVALHLGLPSSGATSNNNTTTCEEVSVVSVSQEQEQEGIGGGSSSSVEYGSNSRSMMMNRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNAHKPYGIDSLDHDDNEPDGSEIDQENDLSNSTTTHHHNT 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151200g00010 369 Gene3D Classic Zinc Finger 258 335 - -
Stsc151200g00010 369 MobiDBLite consensus disorder prediction 45 59 - -
Stsc151200g00010 369 PANTHER ZINC FINGER PROTEIN WIP2 30 356 IPR043584 GO:0003700|GO:0010468
Stsc151200g00010 369 FunFam Zinc finger protein WIP2 250 332 - -
Stsc151200g00010 369 SUPERFAMILY beta-beta-alpha zinc fingers 263 301 IPR036236 -
Stsc151200g00010 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Stsc151200g00010 369 MobiDBLite consensus disorder prediction 45 83 - -
Stsc151200g00010 369 MobiDBLite consensus disorder prediction 338 369 - -
Stsc151200g00010 369 MobiDBLite consensus disorder prediction 354 369 - -
Stsc151200g00010 369 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Stsc151200g00010 369 Gene3D Classic Zinc Finger 196 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151200g00010 Stsc-Chr151200 56039 57819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151200g00010 18 354 C2H2 Transcription Factor Family AT1G51220 56.932 6.57e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc151200g00010 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151200g00010 - - gmx:100789416 437.573