Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151199g00005 ATGCTAACGTTTAGTTTTGTGTTGTGCATGAATTTATTGGTCAAAAATTCTGAGATGCCAGTTTACTTGGGAGCTTATGATGACGAGGAGGCAGCAGCTAGAGCATATGATCTTGCTGCTTTGAAATACTGGGGTCCAGGAACGCTTATTAACTTCCCAGTGACTGATTATAAAAGAGATCTTGATGAAATGCAAAGTGTTTCCAGGGAGGATTACCTTGCCTCTTTGCGTAGGAAGAGCAGTGGTTTTTCAAGAGGAATATCAAAATATCGTGCACTCTCCAGTCGATGGGAGCCATCATATGGTCGTATAGCTGGATCGGATTACTTCAATAGCATGCATTATGGCGATGATTCAGCAGCAGAAAGTGATTACATGAGTGGTTTCTGTATAGAAAGAAAGATTGATTTAACTAGTCACATCAAGTGGTGGGCATCTAATAAAAATCGACAGCCTGATAGTGGGACAAGATTATCAGAAGAAAAGAAACATGGATTTGCTGGAGATGTTTGTAGTGAACTTAGGATACTAGAGCAAAAAGCCCAACCTACTGAACCATACCAAATGCCGGAGTTAGGTCAGCCCCACAATGAGAAAAAACATAAAAGTTCTTCGGGATCTGCCTTAAGTATTCTATCACACTCTGCCGCTTACAAAAGCTTGCAAGAGAAAGCAGCCAAGAGACAGGAAAATAGTACAGAAAATGATGAGAACGAAAACAAGAATATAGTCAGTAAGTTGGATCACGGCAAAGCAGTTGAGAAACTAAGTCAGGAGGGTGGAAATGACCGACTTGACATTGCAATGGGGATGAGCGGAGCATTGTCACTTCAGAGAAATGTTTACCCGTTGACTCCATTTCTGTCTGCACCACTCTTGACAGCCTACAACTCTGTAGATCAATTAGGAGATCCCGTTCTCTGGACATCTATTGTTCCCATACTTCCAGCTGGCATGATTCCTCGTACAACGGAGGCTACCAAGACTGAGACCAGTTCAACTTACACTATGTTTCAGCCAGAGGAGTGA 1029 0.4227 MLTFSFVLCMNLLVKNSEMPVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYKRDLDEMQSVSREDYLASLRRKSSGFSRGISKYRALSSRWEPSYGRIAGSDYFNSMHYGDDSAAESDYMSGFCIERKIDLTSHIKWWASNKNRQPDSGTRLSEEKKHGFAGDVCSELRILEQKAQPTEPYQMPELGQPHNEKKHKSSSGSALSILSHSAAYKSLQEKAAKRQENSTENDENENKNIVSKLDHGKAVEKLSQEGGNDRLDIAMGMSGALSLQRNVYPLTPFLSAPLLTAYNSVDQLGDPVLWTSIVPILPAGMIPRTTEATKTETSSTYTMFQPEE 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151199g00005 342 SUPERFAMILY DNA-binding domain 18 54 IPR016177 GO:0003677
Stsc151199g00005 342 MobiDBLite consensus disorder prediction 220 241 - -
Stsc151199g00005 342 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 20 228 - -
Stsc151199g00005 342 Gene3D AP2/ERF domain 12 55 IPR036955 GO:0003700|GO:0006355
Stsc151199g00005 342 MobiDBLite consensus disorder prediction 183 206 - -
Stsc151199g00005 342 ProSiteProfiles AP2/ERF domain profile. 1 53 IPR001471 GO:0003700|GO:0006355
Stsc151199g00005 342 SMART rav1_2 15 59 IPR001471 GO:0003700|GO:0006355
Stsc151199g00005 342 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151199g00005 Stsc-Chr151199 27912 30284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151199g00005 21 338 AP2-EREBP Transcription Factor Family AT2G41710 54.867 4.47e-103 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151199g00005 K09285 - gmx:100814117 507.679