Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151199g00002 ATGGAGGGAGCAATAATATGTGAGAATAATAATAATAGTGGTAGTAATAATAAAGGGTTATTATTGGAATGTGGAAGGAAGTGCAATAATCCACCACCGTTCTTGTTGAAGACATACATGCTTGTGGAGGATCCGGCCACCGACGAAGTGGTGTCGTGGAATGCGGACGGCACGGCGTTCGTGGTGTGGCAGCCGGCGGAGTTTGCCCGTGATCTCCTCCCAACACTCTTCAAGCATAGCAACTTCTCTAGCTTCGTCAGACAGCTCAATACCTATGGTTTTAGGAAAGTTGCAACAAGCAGATGGGAATTCTCAAATGACAAGTTCAAGAGAGGAGAAAGAGAAATGCTATGTGAAATTCGACGAAGAAGAGCATGGACAAGCAAGCAACAAAGGAATAATGCAGCAACACCAGCACCAAACCAAGACTCCGATGAAGATCAAAGGTCTTCATCGACTTCTTCGTCTTCGGGTTACACCACTCTAGTGGATGAGAACAAGCGCCTCAAGAAGGAGAATGGGGTGTTGACTTCTGAGCTCACCACCATGAAGAGGAAGTGTCGGGAACTGCTTGATTTGGTGGCGAAATACTCGAAAGCTAAGGAAAAGGAAGATAAAGAAGAAGAAGATGACGACCAAGGTGGAAGGCCAATGCTGTTTGGGGTGAGATTGGATGTTGAAGGACATAGGCAGGTGAAGAGGAAGAGAGACGAGATACGTGAAAGCGCAAGCATTTTGCTCTCTCAATCATGCAAATAG 759 0.4598 MEGAIICENNNNSGSNNKGLLLECGRKCNNPPPFLLKTYMLVEDPATDEVVSWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFSNDKFKRGEREMLCEIRRRRAWTSKQQRNNAATPAPNQDSDEDQRSSSTSSSSGYTTLVDENKRLKKENGVLTSELTTMKRKCRELLDLVAKYSKAKEKEDKEEEDDDQGGRPMLFGVRLDVEGHRQVKRKRDEIRESASILLSQSCK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151199g00002 252 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151199g00002 252 MobiDBLite consensus disorder prediction 199 216 - -
Stsc151199g00002 252 MobiDBLite consensus disorder prediction 226 242 - -
Stsc151199g00002 252 Coils Coil 166 186 - -
Stsc151199g00002 252 FunFam Heat stress transcription factor B-4 26 124 - -
Stsc151199g00002 252 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 197 IPR027725 -
Stsc151199g00002 252 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151199g00002 252 MobiDBLite consensus disorder prediction 127 164 - -
Stsc151199g00002 252 SUPERFAMILY "Winged helix" DNA-binding domain 29 123 IPR036390 -
Stsc151199g00002 252 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151199g00002 252 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151199g00002 252 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151199g00002 252 Gene3D - 26 124 IPR036388 -
Stsc151199g00002 252 MobiDBLite consensus disorder prediction 129 163 - -
Stsc151199g00002 252 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151199g00002 252 MobiDBLite consensus disorder prediction 199 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151199g00002 Stsc-Chr151199 2081 5054 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151199g00002 31 225 HSF AT2G41690 55.981 6.31e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc151199g00002 HSF_DNA-bind 6.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151199g00002 K09419 - gmx:100802739 328.946