Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151198g00002 ATGGATGAAAAGGTGGAAGGTCTTCAAGTGGAATTAGAACGTGTGAAAGAGGAGAATAGTGATCTAAGATTGATGCTTGAAGTTCTGAGCAGCAAATACAAAAGCCTTCAAACCCAAATTCAAGATATAAACAAGGAATCGGAGCAAATAATAGGCTTCAATAATAATAATTCAATGCATCGTATTGTTGATTATTCAACAAATTGCAAGAGACCAAGACTAGTAGAGTTTCCGACAGCTAAAAAGCCATTGCAAATCTTTGCCAGAACCAACCCCAAGGATGATACTTTGATAATAAGAGATGGATATCAATGGAGGAAGTATGGGCAGAAGGTTACCAAAGACAATGCTTCACCAAGAGCCTACTTCAGGTGTTCCATGGCTCCTACTTGCCCAGCCAAGAAGAAGGTGCAAAAATGCATAGATGACAAGTCTATATTAGTTGCAACCTATGATGGAGAACACAACCATGCTGCAATTCATGATTCTTTGATACCTTCTTCATCCACACCCAAAGGCTCAGTGGCTAATAACATTACTAATAATTATAATAATTATCATTATTGTAAAAATAATGATTTACCTTTTACAATCTTAGAAAATGACAAAAACTGGCCTCATCAAAGAGGAAGCAGCAAAATTGAAGAATATGCAAGTTCCTTAATCAAAGATCCTGAGTTCACTGCAGCATTAGCAGAAGCAGTTGCACGCACCATCACTCATCAGAGTAATAAGGAACAAGACCTAGACCTCAATTTGGGGCTTCCACAAGAGTGA 777 0.3784 MDEKVEGLQVELERVKEENSDLRLMLEVLSSKYKSLQTQIQDINKESEQIIGFNNNNSMHRIVDYSTNCKRPRLVEFPTAKKPLQIFARTNPKDDTLIIRDGYQWRKYGQKVTKDNASPRAYFRCSMAPTCPAKKKVQKCIDDKSILVATYDGEHNHAAIHDSLIPSSSTPKGSVANNITNNYNNYHYCKNNDLPFTILENDKNWPHQRGSSKIEEYASSLIKDPEFTAALAEAVARTITHQSNKEQDLDLNLGLPQE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151198g00002 258 Coils Coil 5 46 - -
Stsc151198g00002 258 SUPERFAMILY WRKY DNA-binding domain 95 158 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc151198g00002 258 SMART WRKY_cls 99 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151198g00002 258 Gene3D WRKY domain 86 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc151198g00002 258 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 244 IPR044810 GO:0003700
Stsc151198g00002 258 ProSiteProfiles WRKY domain profile. 94 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151198g00002 258 Pfam WRKY DNA -binding domain 101 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151198g00002 Stsc-Chr151198 30300 32675 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151198g00002 2 247 WRKY Transcription Factor Family AT1G80840 35.986 3.58e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc151198g00002 WRKY 1.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151198g00002 - - mtr:11435998 282.337