Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151198g00001 ATGGCATTGTTCCGCAAGTTCTTCTATAAGAAGCCCCCAGATGGGCTTCTAGAAATCAGTGAAAGGGTTTATGTCTTTGATTATTGCTTTACGACTGATATTATGGATGAAGATGAATATAAAGTACATATAAGAGGGATAATTGAGCAACTTTATGATCACTTCCCCGAAGCTTCATATATGGTGTTCAACATGGGGGAAGGAGAAAATCAAAGCCAGATTTCTAGTATTTTGTTTGACTATGATGTGACTGTGATGGACTATCCTCGACAGTACGAAGGTTGCCCAATACTCACCATGGAGATGATTCACCATTTCCTGAGGTCATGTGAAAACTGGCTTCAGCTTGGGCTACAAAACATTATCTTAATGCATTGTGAACGAGGTGGATGGCCTGACCCTTTTATGGCAGCTGATCGGACTCCCAAAGTTCTTTTTTCAACTCCAAAAAGGAGCAAACTTGTTCGGTATTACAAGCAGGCTGATACAGAGCTGATTAAGATGGACTTACATTGTCATGTTCAAGGCGACATTGTTCTTGAGTGTATTACTCTAGAAGATGATTTGGATCGTGAAAAAATGATGTTTCGTGTGATGTTTAATACAGCATTCATAAGGTCAAATATTTTGATGCTTAACCGTGATGACCTTGACATATTATGGGATACTAAAGACCAATTCCCAAAAGATCTTAGAGTAGAGATTCTTTTCTCGGATATGGAAACAAAATCTTCTGTTATTTCAGTTGATCTGCCTTATCTCGAGGAGAAAGATGGCCTACCAATTGAAGCATTTGCTAAGGTTAAAAAGATGTTCAGCCATGTTGACTGGCTCGAGACAATTGCAGCATCAAATATCCTTCTGGAAAGATTTGACGGTGCACCTTCTCCCGGAACAGGCCACTTGCGAAAGGATTCATTGCATGGAGGATCAGGATTGGATTCCAAGACACAAGTTGATGTGAAGAGTCCTGACTCCAAATTTGAGGGGACACTTGCTATGTCTTCACTCAAATCTGGTGATGTTTCTTTGGAAAAGAAGGTAGAAGCATTTAAATCAATGGCATTGCCAGGAAATAACATCGATACTTCTACTCATTCAGTTTCTACTAGGAAGGAAATCAATTCAAGAGAATCAAAGGAATCAATGGAAAATAATGCTGAGTTTCCTACTTCTATGATTCAAGGGAAACAATCAACTCCCTTAACCGAACCATCCATGGTTTCAAAATCCAATGCAAAGTTGGAAAATGACACCATGCATCCTACATCTGTGGCTCGAAGCATACAATCTATTTCCACATCAACTGATGCAAATTCAGCACTGTTGGAATCAAGCAAAAAAGATACTGAATCATTAAAATCAGGGGCATTGTTTGAAAATGATAGAAGATCTAAACCTGAACCACTGAAGATGCCAGAAAGTGATTTGAAGGCAGATTCTCTGGAACCGCATGCAGTTCCGGCAAGTAACATTAAGACTCTCACACCAGTGGGTCTGGGGACGCATCTTACTCCCTCAACAGATTCAGGTTCTGCTATTCCAAGGGTTGAACCATTAGAAACAAAGGCATTGTCGAAAAATGATACCAAGTATCCTCTATCTATGGCTCAGGAGAAAGAGTCTGTTCCTGTAATGAAACCAAGCAGTGTTGCAGATTCAATGGAAAAGAAGATTGGAATGTTAGAGTCAAAGGAAAGGGATAGTGAATCACTAGAGCGAAAATCATTGCTTGATGCCAATGGTCCTTCATCTGAGACTTCTTGCACACAATCAATTCCTTTAACCAAATCTGTGGTTGCAAATTCAAAGAAGGAGGAGGTTAGGGAATTGGAACCACAGGTGTTGTCAGAAATTGATTCCAAGAGTCTCACATCCATAGATCAGAGGAAACAATGTAGTCCCCAACCTGAACCATCCATTGGCAGTAAGTTTTATGCTTCCATGGCTCCGGGGAAACAGTCTATTCCCTCGATTGAACCCCGTGTTGATGCTAATTCAGTGGAAAAGACGATTGAACCACTAGAGTCAATGACGAAAGATACTGAATCATTAGAATCAAAGGGATTGCTTAAAAATAAGACCAAGACATCGACATCTATGGCTCAGGAGGAACAGTCTATTCCATTGGTGGAACCATCTATCAAGGCTAATTCCATCGAAGAGATTAGGCCATCAGAGTTCATGGTAAAGGATACTGAATCATCAGTATTGAAGGCATCGCTTGAAAGTGAGACCAAGAGCTCAACATATATGGCTCAGGAGAAACAATCTATTCCGATGATTGAACCATCTATTGATGCTAATTTAATGGAAAAGAAGATTGGACCATTAGAGTCTAAGGTAAAGGATACTAAATCATTAGAGTCAAAGCCATCACTTGTAAGTGAGACAAAGAGTTCAACATCTATGGAGCAGTCTATTCCCTTGATTGAACCATCCCAGGATGTAAATTCAATAAAGGCCCGAGAATTAGAACCAATGATGTTCTCAAGAACGGATACTAAGAGTCTCACATTTACAGATCAGAGGAAACAACATAGTCCCTCACTTGAGCCACCTGTTGATGCAACCTCTAGTAGAAAGATGACTGAATCTCAAGAACTGCAGGTTCCTCTTCAGCCTACCAAAAGCATATCTCCACCGGCGCATCAAGCAATTCGACCTGCTATGGCATCAGGTTCACCTTCAGCTATCACAAGATTTCTGAGTTCATCATCAGCTCTTGGAATAATGTCTGTGTTGCAGGATGATGCACCAAAGGATATCAAAGGACAAGTCACACCTGCAGTGAAATCTCCTCTGTCTGGTAGTCCAGATTCAAAGGTGTCGAAATCAGCAGAGCATAGTTCTGAATGTGTTCCAGCACCAACTCCACAGATATTGCATACGTCTTCCCCGGTAAAACCTTCGGTGGATGCTGTTGCGACCATAGAGAAGACATTTGGACTCAATGCTCCTGTGGTTGCTCCTTCCCGTCCTCCATCTACACCTTCATCACCTCCTCAAACTGAGCCTGTTGCAAAGTCAATACAACCTACTGATACACATAAACTTGAAAGCAAACTAGATGATAAAGGCCAGAAAACATTACCTACTCCTTCCCGTCCTCCTCCTCCAGCCCCTTCCCTTCCTGAAACATCATCTTCCATCGCCAAAGATTCATTAAAAAGTCCCTCTCCTCTGCCTGCTCCTCCTCCTCCTCCTCCACCTCCATCTTTAACCAGACAGACTTCATCATCTTCAGCTGATGGACCCTTGAGTATGAACAAGGCCGCTGCTATGCCTATTCCACCTCCCCCACCTCCACTGTCAACTGGACAGACCTCATCATCTACAATACCTCCTCCTCCTCCTCCAATGTCTGGGCTTCCTCCTTCTGCGGTGTCTCGTCCCCCTCCCCCACCTCCTCCAACATCACAAGTTCCACCACCGCCTCCTCCTCCAGCTTCTGTTTCTGCAAATGTTCCACCTGTACCCCCACCGCCACTTCCAAATGGATTGACAAGATCTGGCTCTTACTCATCGCAAGTTAATGCTAATGTGCCTCCAGTTCCCAGACCGCCTCCAGCTCCTGGATCGCCTGGAGTTCCTGGACCGCCTCCCGTTCCCGGACCGCCTGGAGTTCCTGGGCCACCTGCTGTTCCTGGATTGCCTGGGAAAGGACGTGGCCTGCTGCGAGCTAATTCCAAGGGTATTTGTACTAAAAAGAGCAATTTGAAACCTTACCATTGGTTAAAGTTAACAAGGGTCATGCAAGGAAGTTTATGGGCTGAGACACAAAAACTTGATGAAGCTTCAAGGACTCCAGAGTTTGACATGACAGAACTTGAGTCTCTTTTCTCTGCTACTGCTCCAAATTCTGATGCAAAAGGAGGAAAATCAAGTCTCCATTCTGCACAGAAAGTGGAAAAAGTCCAACTGATTGAACTCAGGCGTGCATATAACTGCGAGATCATGCTTTCAAAAGTCAAAATACCTTTGGCTGATCTAATGAGCTCTGTGCTAGAATTGGATGAATCAGTGTTAGATATTGATCAGGTTGAAAACCTCATCAAGTTCTGTCCAACCAAGGAAGAGATGGAGCTGCTCAAGAACTATACTGGAGATAAGGAGCACTTAGGAAGGTGTGAACATTTCTTCTTGGAATTAATGAAAGTCCCCAGAGTTGAAAACAAGCTAAGAGTTTTCTCTTTTAAAATTCAATTCAACTCTCAGGTTTCAGAACTCAAGAGAGACTTGAATATTGTGAACAGTGCATCTGAAGAGATCAGGAGTTCAGTCAAATTGAAAAGAATCATGCAGACCATTCTTTCTCTTGGCAACGCTTTGAACTACGGAACTGCAAGAGGTTCTGCACTTGGATTTCGATTGGATAGTCTCCTTAAACTCACCGATACACGAGCCAAGAACAACAAGATGACTCTTATGCATTATCTTTGTAAGGTGATTGCTAAAAAGCTTCCGGAGCTTTTAGAATTCCCCCATGACCTAATGAATTTGGAGGCTGCAACAAAGATACAATTGAAATATTTGGCAGAGGAAATGCAAGCTATTAGTAAAGGACTGGAGAAGGTAGTTCAGGAATTGACAGCATCAGAGAATGATGGGCCGGTTTCAGCAGACTTCTGCCAGATACTAAAGGAATTTCTTGCTAATGGGGAAGCCGAAGTGAGGGCTTTGGCTCAACTCTATACCAATGTGGGTAGAAATGCAGATGCATTAGCCTCGTACTTCGGAGAAGATCCAGCGCGTGTTCCATTTGAACAAGTTGTATCTACTCTGCTCAACTTTGTGAGGATGTTCGTCAAAGCGCATGAAGAAAACTGTAAGCAGATGGAATTCGATAAGAAGAAAGCCGAGAAGGAAGCAGAAAACGAGAAGCATAAGGTACCTCCTAAGGAGTCCGAAAATGTGATGCCGCCGGCCATCAAAAGTGGGGATATCCAATATGAGCAGATGCATTTTTCTTAA 4974 0.4278 MALFRKFFYKKPPDGLLEISERVYVFDYCFTTDIMDEDEYKVHIRGIIEQLYDHFPEASYMVFNMGEGENQSQISSILFDYDVTVMDYPRQYEGCPILTMEMIHHFLRSCENWLQLGLQNIILMHCERGGWPDPFMAADRTPKVLFSTPKRSKLVRYYKQADTELIKMDLHCHVQGDIVLECITLEDDLDREKMMFRVMFNTAFIRSNILMLNRDDLDILWDTKDQFPKDLRVEILFSDMETKSSVISVDLPYLEEKDGLPIEAFAKVKKMFSHVDWLETIAASNILLERFDGAPSPGTGHLRKDSLHGGSGLDSKTQVDVKSPDSKFEGTLAMSSLKSGDVSLEKKVEAFKSMALPGNNIDTSTHSVSTRKEINSRESKESMENNAEFPTSMIQGKQSTPLTEPSMVSKSNAKLENDTMHPTSVARSIQSISTSTDANSALLESSKKDTESLKSGALFENDRRSKPEPLKMPESDLKADSLEPHAVPASNIKTLTPVGLGTHLTPSTDSGSAIPRVEPLETKALSKNDTKYPLSMAQEKESVPVMKPSSVADSMEKKIGMLESKERDSESLERKSLLDANGPSSETSCTQSIPLTKSVVANSKKEEVRELEPQVLSEIDSKSLTSIDQRKQCSPQPEPSIGSKFYASMAPGKQSIPSIEPRVDANSVEKTIEPLESMTKDTESLESKGLLKNKTKTSTSMAQEEQSIPLVEPSIKANSIEEIRPSEFMVKDTESSVLKASLESETKSSTYMAQEKQSIPMIEPSIDANLMEKKIGPLESKVKDTKSLESKPSLVSETKSSTSMEQSIPLIEPSQDVNSIKARELEPMMFSRTDTKSLTFTDQRKQHSPSLEPPVDATSSRKMTESQELQVPLQPTKSISPPAHQAIRPAMASGSPSAITRFLSSSSALGIMSVLQDDAPKDIKGQVTPAVKSPLSGSPDSKVSKSAEHSSECVPAPTPQILHTSSPVKPSVDAVATIEKTFGLNAPVVAPSRPPSTPSSPPQTEPVAKSIQPTDTHKLESKLDDKGQKTLPTPSRPPPPAPSLPETSSSIAKDSLKSPSPLPAPPPPPPPPSLTRQTSSSSADGPLSMNKAAAMPIPPPPPPLSTGQTSSSTIPPPPPPMSGLPPSAVSRPPPPPPPTSQVPPPPPPPASVSANVPPVPPPPLPNGLTRSGSYSSQVNANVPPVPRPPPAPGSPGVPGPPPVPGPPGVPGPPAVPGLPGKGRGLLRANSKGICTKKSNLKPYHWLKLTRVMQGSLWAETQKLDEASRTPEFDMTELESLFSATAPNSDAKGGKSSLHSAQKVEKVQLIELRRAYNCEIMLSKVKIPLADLMSSVLELDESVLDIDQVENLIKFCPTKEEMELLKNYTGDKEHLGRCEHFFLELMKVPRVENKLRVFSFKIQFNSQVSELKRDLNIVNSASEEIRSSVKLKRIMQTILSLGNALNYGTARGSALGFRLDSLLKLTDTRAKNNKMTLMHYLCKVIAKKLPELLEFPHDLMNLEAATKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSADFCQILKEFLANGEAEVRALAQLYTNVGRNADALASYFGEDPARVPFEQVVSTLLNFVRMFVKAHEENCKQMEFDKKKAEKEAENEKHKVPPKESENVMPPAIKSGDIQYEQMHFS 1657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 563 591 - -
Stsc151198g00001 1657 SMART it6_source 1230 1655 IPR015425 -
Stsc151198g00001 1657 Gene3D Formin, FH2 domain 1249 1638 IPR042201 -
Stsc151198g00001 1657 SMART PTEN_C2_2 111 239 IPR014020 -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 1059 1075 - -
Stsc151198g00001 1657 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1230 1628 IPR015425 -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 385 446 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 1182 1217 - -
Stsc151198g00001 1657 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1304 1629 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 951 969 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 1616 1635 - -
Stsc151198g00001 1657 Gene3D - 115 243 - -
Stsc151198g00001 1657 Pfam Formin Homology 2 Domain 1234 1602 IPR015425 -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 622 641 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 923 969 - -
Stsc151198g00001 1657 PANTHER FORMIN-J 732 1630 - -
Stsc151198g00001 1657 Coils Coil 555 575 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 298 324 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 1015 1029 - -
Stsc151198g00001 1657 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 134 240 IPR035892 -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 782 807 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 1093 1167 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 1616 1644 - -
Stsc151198g00001 1657 ProSiteProfiles C2 tensin-type domain profile. 108 240 IPR014020 -
Stsc151198g00001 1657 Coils Coil 1603 1630 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 984 1224 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 791 807 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 832 881 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 831 882 - -
Stsc151198g00001 1657 Pfam C2 domain of PTEN tumour-suppressor protein 133 238 IPR014020 -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 447 481 - -
Stsc151198g00001 1657 MobiDBLite consensus disorder prediction 362 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151198g00001 Stsc-Chr151198 13058 24866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151198g00001 133 307 FH2 protein (formin) Gene Family AT2G25050 57.979 5.27e-61 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151198g00001 - - lja:Lj5g3v0483820.1 1030.78