Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151197g00012 ATGCCGAAGCAGATTCATGAGATTAAGGACTTCCTTCTAACTGCAAGGAGGAAGGATGCACGATCGGTGAAGATCAAGAGGAGCAGAGATGTGGTGAAGTTCAAGGTTCGATGCTCGAAGTACCTCTACACGCTCTGTGTCTTTGATTCTGAGAAAGCTGATAAGTTGAAGCAATCACTTCCTCCAGGTTTGAGCGTTCAGGATCTGTGA 210 0.4619 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151197g00012 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Stsc151197g00012 69 FunFam 60S ribosomal protein L38 1 69 - -
Stsc151197g00012 69 Pfam Ribosomal L38e protein family 2 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Stsc151197g00012 69 Gene3D - 1 69 IPR038464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151197g00012 Stsc-Chr151197 46513 47428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151197g00012 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.203 4.81e-44 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151197g00012 K02923 - pvy:116137888 139.428