Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151197g00004 ATGTCTAATTATTATTCCAATACTACATATTCTTTTGATGATGATGATGAGTCTCCCCAACCGTGGTCGTCGCGGCGCGGCCACGAGTTTTGGTATGCGAGAAGGACTTTTCTCAAGAGCTACCATTTGAGTTTGGAGAAGAACAAGAATAGTGGGTTCAAGGCGAAGTTGAAGAAGTCAGTGAAGGAAGTGAATGAAGCAGCCATGGGAGTTGTTGCAAGGATGCGTCAAGGGGTTTCCAAGAAGAAGCTTGGGATCAAAACATTTAAGCATAGAAGAATAAAGCAGAATGAAGATTCTGATGTGTGTGAGAAGTCTCAGGCAACTGTGATTTGTTGTGCAGATGAAGCAGCTTTGTGTGCCAAATGTGATGTTGAGATTCATGCTGCTAACAAGCTTGCTAGAAAGCACCAGAGACTCCTCCTTCAATGCCTCTCTAGCAAGCTTCCCAGATGTGACATATGCCAAGACAAGCCGGCTTTCATATTCTGTGTTGAAGACAGAGCACTGTTCTGTCAGGATTGCGACGAACCGGTTCACTCGGCCGGAAGCCTCTCGGCGAACCACCAGAGATTCCTTGCTACCGGAATCCAAGTGGCATTGAGTTCTTCAGCTAATTGCAACATAGGCAATGAAAAGAGTCACTTGGAGCCACCAAATAGGAACAATGCACAACAACTTCCTATGGAAGTTCCTCCTCAGCAAGTTCCTAACTTCACATCTTCTTGGGCTGTTGATGACTTATTGGAACTATCAGCCTTTGAATCACCTGAAAAAGGTGTGGTTCAGAAGGAATCTATGCAGTTTGGAGAATTGGAATGGATTGAAGATGTTGGTCTTTTTGGTGAACAATTTCCACATGAAGCCTTGGCTGCTGCTGAAGTTCCTCAGCTTACTAGCAACAATGTTGCTTCATTCAGAACCACCAATAATAAGTCCTACATGTCTAACAAGAAACCTAGAATTGAAGATGATGATGATGAGTTCTTCACAGTGCCAGATCTTGGTTGA 1011 0.4392 MSNYYSNTTYSFDDDDESPQPWSSRRGHEFWYARRTFLKSYHLSLEKNKNSGFKAKLKKSVKEVNEAAMGVVARMRQGVSKKKLGIKTFKHRRIKQNEDSDVCEKSQATVICCADEAALCAKCDVEIHAANKLARKHQRLLLQCLSSKLPRCDICQDKPAFIFCVEDRALFCQDCDEPVHSAGSLSANHQRFLATGIQVALSSSANCNIGNEKSHLEPPNRNNAQQLPMEVPPQQVPNFTSSWAVDDLLELSAFESPEKGVVQKESMQFGELEWIEDVGLFGEQFPHEALAAAEVPQLTSNNVASFRTTNNKSYMSNKKPRIEDDDDEFFTVPDLG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151197g00004 336 CDD Bbox1_BBX-like 152 193 - -
Stsc151197g00004 336 MobiDBLite consensus disorder prediction 1 21 - -
Stsc151197g00004 336 PANTHER B-BOX ZINC FINGER PROTEIN 22 101 335 - -
Stsc151197g00004 336 MobiDBLite consensus disorder prediction 1 17 - -
Stsc151197g00004 336 MobiDBLite consensus disorder prediction 315 336 - -
Stsc151197g00004 336 Gene3D Classic Zinc Finger 95 194 - -
Stsc151197g00004 336 Pfam B-box zinc finger 148 190 IPR000315 GO:0008270
Stsc151197g00004 336 CDD Bbox1_BBX-like 101 142 - -
Stsc151197g00004 336 SMART bboxneu5 96 142 IPR000315 GO:0008270
Stsc151197g00004 336 SMART bboxneu5 147 194 IPR000315 GO:0008270
Stsc151197g00004 336 ProSiteProfiles Zinc finger B-box type profile. 147 194 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151197g00004 Stsc-Chr151197 7713 11773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151197g00004 101 265 Orphan Transcription Factor Family AT1G06040 61.176 5.77e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc151197g00004 zf-B_box 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151197g00004 - - gmx:100814727 383.259