Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151194g00009 ATGGTGACAGCAACAGCTTGGTGCTGGTCATGGACGCTATGCGTTTTCATAACCGGTTTCTTCTTAGGTTCTTTCATATCGGGCAAGCTAATTAATTTGAAATACTTTCTAGAGAGAAGGTTTTGGAATGCCCTACTGTTGGCTTATCTGTCACGTTCACAACAACAGCAGGAAAATCCAACACCAGCTTTGCCGCCGCTGTATAAATACGATGTATTCCTGAGCTTCTGCGGTATCGACACCCGCAACACTTTTATTGATCATCTTTACAGAAATCTCACCCAAAAATGCATCTATGCATTCAAGGATGATCAGCAGCTCCAGAGAGGAGAATCGGTTCCATTACAGCTCATGGAAGCAATAAAACATTCCAGGGCTGCTATAGTTGTCTTCTCTACAAACTATGCCGCCTCAACATGGTGTCTCGATGAAATGGCTGCCATTGCTGATCGTCACAGAGAATCGACGCAGCTTGTTATCCCAATTTTCTATGATGTGGATCCTTCTGATGTTCGAAAACAGAAGGGACCCTACTGGGATGCATTCATTTCACATGCATGCCGATTCAGACGAGATCTTCGCAAGGTTTTGCGATGGAAGATAGCTATGACATATTTGGCCAATTTGACTGGTCACGATATAAGAGATAAACGAGAGACGACACAAATAGAGTGCATCACTCGAGTCTTAATAGAAAAATTGGATCACAAGTTCTCTCCGTATATTGATGATTTGATAGGGATACAACCCCATATAGAAGAACTAGAAAGGCGTCTAGAGTTGAACTCAAACGAGGCTAATGATGTTCGAATTCTTGGAATTTGGGGTATGGGTGGAATAGGAAAGACAACTCATGCTAAGGTTTTGTACGATAAAATCTCTTATGCGTTTGATGCTTGCTGTTTCATCGAGGATGTAAGCAAACTTTATACAGATCATGGTCCGGATAGTGCTCCTACTGAAGTGCGAAAGGCCATTCTTCGTCAAACTGTTCAAGAAGAAAAACTGGAAACACAAAGTCCTAATCACATAACTAGTATCCTACACAAAAGGCTATGTAACTCCACAATCCCTAAAAAGGTCCTTATAGTTCTTGACAATGTTGATGAAGCAACGCAATGGAGTGCTTTGGGCTTAAGATTACTTGGGAGAGGAAGCAGAGTTATCATAATAACAAGGAATAAGCATATTCTTAATGTTTGTGGAGCGGATGCAATTTATGAGGTTCCACTATTGAATGATAATGACGCTCTTGAACTGTTCCTAAGAAAAGCCTTCAGAAATGGTATCCCTAAGCCTAAAATTATTAGTGACATAACTCGCGAGATACTAGATTATGCTCAAAGTCTTCCATTAGCAATTGAGGAACTGGGTTATGCTTTGTATGACGTGGAAGAGAAATCATGGAAAGATGCCTTGGAAAGCTGGAGAAATTATCCTAAAAAGAATGTTATGAATGTGCTACAGAAAAGCTATGACCAACTGAATGAAAATGAGGGGAAAATATTTTTGGACATAGCTTGTTTCTTCGCAGGAAAGAGGAAGGACTTTGTAGAGCATATTCTAAGTAGCCGTGTTGATCAATCATACCTTGCAATTCAGAATATCAGGAAAAATTCGCTCATAACTATTAAGAACCAAGAAATTCATATGCATAAAATGTTACAAGAATTAGGGAAGAAGATTGCTCGGGGAGATCATTCAACGGAGCCAAAGTATTGGACTAGGTTGTGGCGTGTCAAGGATCTCGAAGAAGCCTTAATGTCGAATATGGAGGAGAACAAAAATGAAGCCATAGTTTTAGATGATCGGGCAGATGTCACCACATACAGTCATTTGAGGATTCAAGGATTGTTTGAAATGAAAAAACTTGCACTACTCATATTACACTTCCAAAATTTTCCAGAACCCTCCAATTTTCCGAACCTTCAAAACGCCAAAATGCGGTATCTTTTGTGGCACGGTTATCCTTTCTCTTCTTTTCCAATATTCATATGGCGTAACCTTGTTGAATTGAATCTACCTAACAGCAGAATCCAACGACTTTGGGATGGGATTCAGTTCGTCCCAAATTTGAAAAGGATGGATTTGAGGAACTCAAAACTAACTATCACTCCAAATTTTTTATGCTGCCGAGGACTGGTGCGGCTGGATCTTACAGGATGCAGAAACCTAATTGAAGTCCATGAATCAATTGGACTTCTCAGAGACCTTGATTACTTGAGTCTTCGAGATTGTAGCAGTCTAGCCTTTCTCAATTTCGGCTCCAATTGCCAGTTAATTTCTCTAAGAACTCTATTGCTCTCTGGCTGCACCAACCTCAGGGACACGCCAGATTTGACAGGGCTTTCAAATCTTAGTGTACCTGAGTATGAGAGGCAGCAATGCGAAAACCTTCTTGTTCAAACCTTCTTGGTTAAAAGTTGGTTAATGGCGAAGGATGAAAAGTGCTTGGGAACAGAAGACAGGAGGAGTGTTTCAGACTTCAGAGTTCAGAGAGATCAAGATAGAGATGTCCCAATTCCCAAGAATCGAATAACTGCTACATTTTATGGAACCAATAATGGCATCAAATACTGGAACAGTTTTCACATCTGTACAATCCCCTCATTCGAAAAGGCATCTTCACCTTCAAGGATGACAAGAAGCTGGAGCAAGGTCAACCCATTTCATCGCAGCTCCTCCACACTTTTAGGGAGTCAAGGATTTCCATTGTTGTCTTCTCAAGGGAGTACCCCACCTCCACTTGGTGTTTAG 2757 0.4084 MVTATAWCWSWTLCVFITGFFLGSFISGKLINLKYFLERRFWNALLLAYLSRSQQQQENPTPALPPLYKYDVFLSFCGIDTRNTFIDHLYRNLTQKCIYAFKDDQQLQRGESVPLQLMEAIKHSRAAIVVFSTNYAASTWCLDEMAAIADRHRESTQLVIPIFYDVDPSDVRKQKGPYWDAFISHACRFRRDLRKVLRWKIAMTYLANLTGHDIRDKRETTQIECITRVLIEKLDHKFSPYIDDLIGIQPHIEELERRLELNSNEANDVRILGIWGMGGIGKTTHAKVLYDKISYAFDACCFIEDVSKLYTDHGPDSAPTEVRKAILRQTVQEEKLETQSPNHITSILHKRLCNSTIPKKVLIVLDNVDEATQWSALGLRLLGRGSRVIIITRNKHILNVCGADAIYEVPLLNDNDALELFLRKAFRNGIPKPKIISDITREILDYAQSLPLAIEELGYALYDVEEKSWKDALESWRNYPKKNVMNVLQKSYDQLNENEGKIFLDIACFFAGKRKDFVEHILSSRVDQSYLAIQNIRKNSLITIKNQEIHMHKMLQELGKKIARGDHSTEPKYWTRLWRVKDLEEALMSNMEENKNEAIVLDDRADVTTYSHLRIQGLFEMKKLALLILHFQNFPEPSNFPNLQNAKMRYLLWHGYPFSSFPIFIWRNLVELNLPNSRIQRLWDGIQFVPNLKRMDLRNSKLTITPNFLCCRGLVRLDLTGCRNLIEVHESIGLLRDLDYLSLRDCSSLAFLNFGSNCQLISLRTLLLSGCTNLRDTPDLTGLSNLSVPEYERQQCENLLVQTFLVKSWLMAKDEKCLGTEDRRSVSDFRVQRDQDRDVPIPKNRITATFYGTNNGIKYWNSFHICTIPSFEKASSPSRMTRSWSKVNPFHRSSSTLLGSQGFPLLSSQGSTPPPLGV 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151194g00009 918 SMART till_3 69 209 IPR000157 GO:0007165
Stsc151194g00009 918 Gene3D Ribonuclease Inhibitor 577 798 IPR032675 -
Stsc151194g00009 918 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 70 796 IPR044974 GO:0006952
Stsc151194g00009 918 Gene3D - 67 235 IPR035897 -
Stsc151194g00009 918 Pfam TIR domain 69 212 IPR000157 GO:0007165
Stsc151194g00009 918 PRINTS Disease resistance protein signature 271 286 - -
Stsc151194g00009 918 PRINTS Disease resistance protein signature 355 369 - -
Stsc151194g00009 918 PRINTS Disease resistance protein signature 758 774 - -
Stsc151194g00009 918 PRINTS Disease resistance protein signature 447 461 - -
Stsc151194g00009 918 Pfam Leucine Rich Repeat 668 687 IPR011713 -
Stsc151194g00009 918 SUPERFAMILY Toll/Interleukin receptor TIR domain 65 211 IPR035897 -
Stsc151194g00009 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 506 IPR027417 -
Stsc151194g00009 918 SUPERFAMILY L domain-like 617 787 - -
Stsc151194g00009 918 Gene3D - 411 496 IPR042197 -
Stsc151194g00009 918 Gene3D - 236 407 IPR027417 -
Stsc151194g00009 918 Coils Coil 252 272 - -
Stsc151194g00009 918 SUPERFAMILY "Winged helix" DNA-binding domain 483 587 IPR036390 -
Stsc151194g00009 918 FunFam Disease resistance protein (TIR-NBS-LRR class) 67 236 - -
Stsc151194g00009 918 Pfam NB-ARC domain 252 494 IPR002182 GO:0043531
Stsc151194g00009 918 ProSiteProfiles TIR domain profile. 68 234 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151194g00009 Stsc-Chr151194 72653 77955 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151194g00009 59 781 WRKY Transcription Factor Family AT4G12020 28.246 3.13e-62 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151194g00009 - - aip:107614139 713.375