Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151194g00008 ATGGAGTCAGTTGATGAGATCCCATCAGCTTATGCCAGTTGGTCATGGACGCTTTGCCTTTTCACCATAGGTGTCTTTCTTGGCACATTCATGCAAAACATGTTCCTCTCTTTGAAATCCTCCCTGGAGAGTAAGCTACTTCGGGCCCTGTTAGGTTATTTCTCACCGTCTTTCGAGCCCGTGACGAGTCCTCCTCCTCCTCTTCCTCCTCGTCTTCCTACCGAGGAACCTTCAACATCCAAGAGCAGTGAAAGGGGACCGCCATCATCGCTGCGGAACTACTACAAATATGATGTGTTTCTAAGTTGTATAGGTACTGACTCCAGCGGAAATTTTACTCGTGTTCTTAACCAATCTATGATCGGAAAAGGTATTTCTACCTTTAAGGTTGATAAGAAGCTTGATGAAGAAGTAGTAGATCCCATACCACCACAACATATATTGCAAGCAATTATAGATTCACGGATTTGTATTGTTGTCTTCTCAAGAGATTATGCTCGGTCAAGCTGGTGTTTGGAGGAAATGGCTACCATAGTTGAATTCAATAAATACCGATTGAATCAAGTTGTTTTTCCGGTTTACTATGATGTGGAGCGGCGTCATGTGCGACGGCAGCTGACTGGGGCATACCAAGATGCCTTTGTTTTGCATTTAAAGAAATTCAAACCCCACAAGGTTGACCGGTGGAAGAAGGCTATGGATGAGTTGACCATCAAGAGGAGTGCTTGGTTCATCATCAAAAATAGTTCAGAGCTCGTGGATGGTGAAAGGCTCATTCAGGGAGTGTTGAACAAATTAGGTTCCTCCTCTACCCATAGATCAAGATCTGCTGATGATTCGGTTCGGTTACGACCCTCCATGCTTTCCAAGGTCGCTACAAGTAGCCAGTCCTGCCAGGGAAATTCACCTCTGGGGTCCAGTAATTTTCTTTCCTATCATAACATAAATAGCTCTTTGAGGAAGGAACCAACAACACCGTATTCGAATAGATACACACCGTCAACAACAATGAACAAATCAAGGTTTGAGGATGGTTTGGTTCAACGACGACCCTCCATGAGCTCCAAGGTTATCAAAGATCGTATGTTGGGCCAAGAAAACCCAGTAGCCGCGACTCTCTCTTCGGTTTATCGAAGTCGTCCCCAAACTTCACTTTCAGCTCTTACTAGGTTTGGATCATTGGATAAGAAATTCTCAAGGTCTGATATTGCTTCATCAGCGTCGTCGTCCATGAGTTACCAAAGTGGAAAATCATCATCACAACAATGTCTCTACAAATATGATGTGTTTCTAAGCTTCTTCAGAGGCAAAAGTCCTGGCGACAAATTTGCTAATCATCTCTGCAATTGTCTCACCAGGCTTGGTATTTCCACCTTCAGATATGATAAGTGGGAGGAGAAAGAAGGAGAGTGTAATATTCCATCACAGATATTGGAAGCCATTAAAGATTCACGGATATCTATAGTTGTCTTGACAAGAGACTATGCTGACTCAATGTGGTGTTTGGAGGAAATGTCAGCAATAGTTGATAATAGCAGCCTCCGAGGGTTAAACAAAAGTGTTATCCCAATTTTCTATGATTTGGATCCTCATTGTGTTCAAATGGACAAGAGACTGGCTAGGGTTCATCGATGGAACAATGCTTTGACGTCTTTGGTCAATTTGCCTGGTGGTCAATATGTAAGAAATAAGCCAAAATTTCAAGAGATTGAAAATGTCATTGAGAAGGTGATGGATATATTAGGTCATAAATTCTCAAAGTCTAGTGATGACCTAGTTGGAATACAACCTCGTATAGAATGTTTAGAAAACCTTCTAAAATTGCATTCATCTGATGATGATGATGATGATTTTCGAGTTCTTGGAATTTGTGGTATGGATGGAATTGGAAAGACAACTTATGCTTCACTCTTGTACGACACAATCTTTGATCTCTTTGATGTTTGTTGTTTCATTGAGAACGTAAGCCAAATTTACAGAGATAGCGATGCCATAGGTGTACAGAGAAGAATCCTTCACCAAATTTCAAATGAAGAAAATTTAGAGATACACAGTCATTTCGAAATCTCTGCTTTCATAAGAAAAAGGCTATCTCTAAATCATAAGGTTCTTATAGTCCTTGACAATGTTGATGAACTGGAGCAGCTACAAAAATTGGGAATAAGTCCAAAATTTCTTGGAAGAGGAAGTAGAATGATCATAACCACCAGAGATGAACACATTCTAAAAGTTTATGGAGCAGATGAAATTCACAAGGTTTCACTACTGAACTATAATGATGCTCATGAACTTTTCTTAAGACAAGCCCTCAAAGACAAATCAAGAAACAATGTTTGTGTGGAGCTAATAGTTCCTAAGATACTTGAATATGCTCAAGGTCTTCCATTAGCCATCAAATCACTGGGTTCTTTCTTCAGCAGACGAGATTATGCTACTGTTTCTGAATGGGAACATGCCTTTGAGAAATTGAGAAAAAATCCAAACGAAGAAATTATGGACATTTTTCGAGTAAGTTTCGAAGAATTACGTCCAAATGAGAAAGAAATATTTTTGCATATAGCTTGTTTCTTCTGCGGGGAGAGAGTAGAGCATGTAAAAAGGATTTTAGATTGTTGTGGATTATTCTCTAGCATTGGGATTCATGCCCTCATAAAAAAGTCACTCGTTACCATTCAAAACAAGGAAATTCATATGCACAGAATGTTACAAGAATTCGGGAGGAAAATGGTTAGAGACAATTATCCAGAAAACCCGGAACCTTGGAATAGATTGTGGCTTCACAAGGATTTTGAAGATGTCTTGACCTCAACAACGGGAACAAACAATAATGTTAAAGCCGTAGTTTTGAGTAAAAATGATGGCATCTCTGAAGACAATAAGTTGAGGATTGAAAGATTGTCAAACATGAAGGAACTGAAATTACTCATATTATATCATGAGAATTTTTCAGGAGAACTCAATTTTCTTTCCAACAACTTGCGATATCTTTCATGGCACGGTTATCCTTTCTCTTATTTGCCTCTATTTGAACCTTACAGTCGTCTAGTTGAATTGAATTTGCCGAACAGCAGAGTCAAACAATTATGGAAAGGCCACAAGAATTTTCCTTATTTGGAAAGGATGGATTTGAGCAACTCAATGGATCTTGAAGAGACACCAAATTTTGAAGGGAGCCTTAATCTTAAAAGGCTAGATTTTACAGGTTGCAAAAAACTAAGCCTAGTGAACCCATCAATTGGACTTCTTACAAAACTTGTTTACTTGAGTTTGAGTGGTTGTATCAATCTGACCAGCCTCAATTTTGGCTATAACAACGATTGTAAGCTGAGTTCTTTGAGAGTTTTACGTCTCTCTTGCTGCACAAAACTTGCAAGCACACCAGATTTTAGAGGGCTTTCAAGTCTCAAGTACCTTGATCTGGAAGAAAGTACACACTTGTTAAGCCTCCATGAATCTATTAGTGCTCTTCCATCACTTGAGTTCTTGAGTTTGAGAGGTTGCAAGTCTCTTGTTGAGATACCTAGCAGCATCAATAATATGGCATCTCTTCAAATCCTAGACGTGAAGGGTTGCATAAATGTAAAGAACCTTCCCGGAGGGCAAAGAGTAATTTCTTCCTTCAATGCTATTGAAGAGTTAAGGTGCTTAGAAGGACTAAATCTACAGAGGAGCTTCTTTAGTTATGTACATAATATACATACTTCTGATGACAGGCTTTCCCAGTTAGAATATTTAAACTTGAAGCATGACTCTGGATTTAAAACACCACTAGATCAGCTTTCATCATTTGATGAACTTTATCAATGGGAAGATATTTTAAAACTGTATCCCCATCGTGTAATTATAACTTAG 3852 0.3915 MESVDEIPSAYASWSWTLCLFTIGVFLGTFMQNMFLSLKSSLESKLLRALLGYFSPSFEPVTSPPPPLPPRLPTEEPSTSKSSERGPPSSLRNYYKYDVFLSCIGTDSSGNFTRVLNQSMIGKGISTFKVDKKLDEEVVDPIPPQHILQAIIDSRICIVVFSRDYARSSWCLEEMATIVEFNKYRLNQVVFPVYYDVERRHVRRQLTGAYQDAFVLHLKKFKPHKVDRWKKAMDELTIKRSAWFIIKNSSELVDGERLIQGVLNKLGSSSTHRSRSADDSVRLRPSMLSKVATSSQSCQGNSPLGSSNFLSYHNINSSLRKEPTTPYSNRYTPSTTMNKSRFEDGLVQRRPSMSSKVIKDRMLGQENPVAATLSSVYRSRPQTSLSALTRFGSLDKKFSRSDIASSASSSMSYQSGKSSSQQCLYKYDVFLSFFRGKSPGDKFANHLCNCLTRLGISTFRYDKWEEKEGECNIPSQILEAIKDSRISIVVLTRDYADSMWCLEEMSAIVDNSSLRGLNKSVIPIFYDLDPHCVQMDKRLARVHRWNNALTSLVNLPGGQYVRNKPKFQEIENVIEKVMDILGHKFSKSSDDLVGIQPRIECLENLLKLHSSDDDDDDFRVLGICGMDGIGKTTYASLLYDTIFDLFDVCCFIENVSQIYRDSDAIGVQRRILHQISNEENLEIHSHFEISAFIRKRLSLNHKVLIVLDNVDELEQLQKLGISPKFLGRGSRMIITTRDEHILKVYGADEIHKVSLLNYNDAHELFLRQALKDKSRNNVCVELIVPKILEYAQGLPLAIKSLGSFFSRRDYATVSEWEHAFEKLRKNPNEEIMDIFRVSFEELRPNEKEIFLHIACFFCGERVEHVKRILDCCGLFSSIGIHALIKKSLVTIQNKEIHMHRMLQEFGRKMVRDNYPENPEPWNRLWLHKDFEDVLTSTTGTNNNVKAVVLSKNDGISEDNKLRIERLSNMKELKLLILYHENFSGELNFLSNNLRYLSWHGYPFSYLPLFEPYSRLVELNLPNSRVKQLWKGHKNFPYLERMDLSNSMDLEETPNFEGSLNLKRLDFTGCKKLSLVNPSIGLLTKLVYLSLSGCINLTSLNFGYNNDCKLSSLRVLRLSCCTKLASTPDFRGLSSLKYLDLEESTHLLSLHESISALPSLEFLSLRGCKSLVEIPSSINNMASLQILDVKGCINVKNLPGGQRVISSFNAIEELRCLEGLNLQRSFFSYVHNIHTSDDRLSQLEYLNLKHDSGFKTPLDQLSSFDELYQWEDILKLYPHRVIIT 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151194g00008 1283 MobiDBLite consensus disorder prediction 320 342 - -
Stsc151194g00008 1283 SUPERFAMILY Toll/Interleukin receptor TIR domain 87 235 IPR035897 -
Stsc151194g00008 1283 MobiDBLite consensus disorder prediction 59 74 - -
Stsc151194g00008 1283 ProSiteProfiles TIR domain profile. 95 250 IPR000157 GO:0007165
Stsc151194g00008 1283 SUPERFAMILY "Winged helix" DNA-binding domain 830 934 IPR036390 -
Stsc151194g00008 1283 MobiDBLite consensus disorder prediction 59 89 - -
Stsc151194g00008 1283 Gene3D - 94 273 IPR035897 -
Stsc151194g00008 1283 Gene3D - 586 749 IPR027417 -
Stsc151194g00008 1283 Gene3D - 421 585 IPR035897 -
Stsc151194g00008 1283 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 97 268 IPR044974 GO:0006952
Stsc151194g00008 1283 Gene3D Ribonuclease Inhibitor 933 1105 IPR032675 -
Stsc151194g00008 1283 Gene3D Ribonuclease Inhibitor 1106 1207 IPR032675 -
Stsc151194g00008 1283 ProSiteProfiles TIR domain profile. 425 577 IPR000157 GO:0007165
Stsc151194g00008 1283 SMART till_3 96 239 IPR000157 GO:0007165
Stsc151194g00008 1283 SMART till_3 426 555 IPR000157 GO:0007165
Stsc151194g00008 1283 Pfam TIR domain 96 267 IPR000157 GO:0007165
Stsc151194g00008 1283 Pfam TIR domain 426 577 IPR000157 GO:0007165
Stsc151194g00008 1283 PRINTS Disease resistance protein signature 791 805 - -
Stsc151194g00008 1283 PRINTS Disease resistance protein signature 697 711 - -
Stsc151194g00008 1283 PRINTS Disease resistance protein signature 620 635 - -
Stsc151194g00008 1283 PRINTS Disease resistance protein signature 1130 1146 - -
Stsc151194g00008 1283 SUPERFAMILY Toll/Interleukin receptor TIR domain 418 556 IPR035897 -
Stsc151194g00008 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 585 853 IPR027417 -
Stsc151194g00008 1283 MobiDBLite consensus disorder prediction 75 89 - -
Stsc151194g00008 1283 MobiDBLite consensus disorder prediction 320 350 - -
Stsc151194g00008 1283 Pfam NB-ARC domain 614 835 IPR002182 GO:0043531
Stsc151194g00008 1283 Gene3D - 756 843 IPR042197 -
Stsc151194g00008 1283 SUPERFAMILY L domain-like 963 1250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151194g00008 Stsc-Chr151194 63348 71425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151194g00008 1109 1247 WRKY Transcription Factor Family AT4G12020 36.000 5.20e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151194g00008 - - var:108332841 748.814