Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151194g00004 ATGGAGATGATGAGAACTGAGGCTACCTTTGAGAACAAATGCTCACGAGGTTCCACCGGCAACGTCTTGAGATTTGTGAGAGCATCAATTGAGTTGGTTTATGTGAACTTCGAGGCGAGGATAGTTGCAAAGTGTCTTGAAAGAAATGGACCCAGAAGCATGGTCAAGGCTCTATTGCGTTACCTAGATTCAGATTCCGACAACATCCAAGATGAGGCATTGGGCGAAGAAGGCCGCCAGTTGAGCCAGGAAGATTCAGCATCTTTTCATCCTCTGGATTCAAATATGAGCCAGGACAGCTCCCTGAGCCAGCAGGAAGATTCAGCTTGGGATCATCCTCCTCCGGAGTCAACGTCAATTATAACCGAGGGGAGTTCGTCTTCTCCCGGGGGTTATAAATATGATGTGTATCTGAGTTTCAGAGGTGCTGATACCCGCAGAAGTTTTATTGATTATCTTAACCATCGTTTCTTGGAAGAAGGTATTTCGGCCTTCAGAGACCAGGTGGATTTAGAGATAGGAGAAATCATCTCATTTCAGATCCTGCGAGCAATTAATGATTCACGGATTTCTATCGTTGTCTTCTCAAGAGGTTACGCTAGCTCAGCTTCGTGTTTGGACGAACTGGTTGCTCTAGTTGATTGTCACAAAGATGGGAAAGTACTTTTCCCAATTTTCTATGATGTGAGTCCAGCTGAGGTTCGAAATCAAAGTGGGGCATACAAGGATGCCTTTGATTCGCACATGGAGAGATTCAAAGAAAATCCTGACAAGATTTACAAATGGAAGGCTGCTATGACGTGTTTGGCCAATTTAAGCGGTTTTAATTTAACAGATAAGGCAAAAGGCGAAGAGATTGAAAGTATCGTTCAGGAGGTGTCGGGCAAGCTGGGTTATAAATTCCAAAGGACAAGGTCTATTGAGAAAAATCCGGAATCCATTGGAAGAAGACTTTCATTGCAGGAAGTCAACAAATATGACGTGTTTCTAAGTTTCAGATGCACTCAAACTTCCTGCACATTTATTTACTATCTTCGTCATTATCTCACCAAGAAAGGATTTTCCACCTTCATGAGTTTCGAGGAGATTCAGAGAGGAGAATCCTTTCCGTCACAGGTCCTCCAAGCAATTAAAGACTCACGGGTTCTCATAGTTGTCTTCACAAGAGATTATGCTGACTCAACAAGCTCTTTGGAGGAAGTAGCTACCATAGTTGACTGTCACCGGGAACTTAAACAAACTATCATCCCAGTTTTCCTTGATGTGGATCGCAGGGATGTTCAAACACAAACTGGCCCTTACCAGAAAGCCTTCGTTTCATATACAGAGGAATTCGAACATGATCCTCTCAAGGTTCAACGGTGGAGGGTAGCTTTGCAGCATATGACCACTCTACACGGTGTGCGTCTAGAACACGAGTCAGAGATTCAAGCTATTGGAAAGATCATTCAGATAGTGGAAGGATTATGCAGTAAATCCTCAAGGCTTAGTAGCCATAATCAAGTTGGCATACAATCCAGTTCAAACAAGCTAGAGAAGCTTTTGAAATTAAAGGATGACTGTGTTAGAGTTCTTGGAATTTGGGGCATGGCTGGATCTGGAAAGACAACTCGTGCTTTAGCTTTGTATGACACAATCTTTCAGCAGTTTGAGGCTGCTTGTTTTATTATGGAGGTAAGCCAGGTTTACAGAGTTGGTGGTGCTACTGCTGTGCAGAAACAAATCCTCCGTCAAACATTAAACGAAGAACTTTCAGATGTGTACAGTCCTTTTGAAATATCTGGCTTGGTAAGGAAAAGGCTATCTTGGAAACAGCTCCTTATAGTCTTTGACAATGTTGATGAACTAATGCACTTGAAGGAATTGGCTATAAACCCGATAATGCTTGGGATGGGAAGTAGGATTATCATAACCACTAGGAATAGGCAAATTTTGGATGCATATGGAGTAGATGTAATGTACCAGATTCCACTATTGAATAAAGATGAAGCTCGCGAACTGTTCCTAAGTGCTTGTTGTGGTATTTCCGATCGCGGCTGTATTGAGTTAATTCCTATAGTACTAGAATGGGCTCATGGTCTTCCGCTGGCAATCGAAGTACTGGCTTCTGTTTTGCAAAACGCTGATGTAACCTCCTGGCAATGTACCTTGAATAGACTGAGAGAGCAACACCAACAACATCAACAAAGCCTTATCCCACTAAGTGGGTTAAGCTACAGACTGAGAAGAAAGCTAGTTTTTGAAATTATGGAGCCTCTTCAAACAAGTTTTGAGAGTTTAGACCAAGAAGAGAGAGAAATCTTTTTGCACATTGCTTGTTTCTTTCATGGGAAGAAGCAGGATTATGTAAACGAAGTTCTAAGTTGTTGTGGATTTTTTGCTGAAATTGGGATTCAAGCTTTGTTGGACAAATCACTCATCACTATCCAAAATGATCAAATTCATGTGCACGGTCTGTTGCAACATTTGGGAAAGAAAATTGTCCAAGAAGAAGATCCAAAAGACCCAGGATTGCGTAGTAGATTATGGCTTTTCGAGGATTTTAGCATTTCCTTGAACTCAGCAATGGAGGGGAACAAACTTAAAGCCATAGTTCTATATGAGGGTACCTCCTCCTCCAAACATGAATATTTGAACATTGAAGGATTGTCAAAAATGAGAAATCTTGAACTGCTCATATTATATGATAAGCACTTTTCTGGAATTCTACCTTCTCTTCCCCATAGATTACGGTATCTTCTGTGGGACGGATATCCTTTCATTTCTTTGCCTTCATTTGAACCATATAACCGTCTTGTTCAATTGAATTTGCCTGACAGCCGCATCAAACACCTATGGAATGGCTGCAAGAACTTCCCAAGTTTGGAAAGGGTGAATTTGAGTTACTCAAAAGAGCTCAAGGAAACGCCAGATTTTGGAGGGAGCCCAAGACTTAAGCGGCTAGATTTCACAGGATGCACAAACCTAGTGCAAATCCATCCATCCGTCGGACTTCTTAAAGAACTTGCTTACTTGAGTTTCCGTAACTGTTATAGATTGTCCATCCTCGATCTTGATGCTGGATGTAACTATGAGACCAAGCCAGATTTTACAGGACTAGGACTAACCAATCTTGAGCACCTTGATCTTGGAGATTGTACAAGTTTATCCACTGTTCATTATTCTATTGGAAATCTTAATAAGCTTAAATTCTTAAACTTGCATGGCTGCAAAAATCTTGTTGAAAAACCTGATTTCAGTATGTTTCCAAGAGATGGGCCAGAGATTGCAGCCAACCCTTTTTCCTATCGGCCTTTGTTTAATTCGTTTGACAGACTTGTTGAATTGAATTTGCCTTACAGCCGGAAGGAACGCCTATGGGATGGCAAGAACTTCCCAAGTTTGCAAAGGGTGGATTTGAGTTATTCAAAAAAGCTCAAGGAGACGCCAGATTTTGGAGGGAGCCCAAGACTTAAGCGGCTAGATCTCACGGGATGCACAAACCTACTGCGAGTCCATCCATCCATCGGACTTCTTAAAGAACTTGCTTACTTGAGTTTCGGTAACTGTTGTAGATTGGTCATCCTCGATTTTGGACATGAATGCAAATTAATATCATTGAGGGTTCTTGACCTCTATAGTTGCACAAATCTTATGAAAACACCAGATTTTACAGGACTGCCCAATCTTGAGCACCTTGATCTTGGAGGATGTACAAGTTTATCCATTGTTCATCATTCTATTGGGACTCTTGTAAAGCTTAAGTTCTTAAATGTGCATGGCTGCATAAATCTTCCTAAGTTGCCTGATATCATTAATGTCGCAGCTCTTCATACTTCAGAGGTTCCTGTCACAAACAAAAAGTACGATAGTCTGAAAATAGATTATTTATAG 3873 0.4134 MEMMRTEATFENKCSRGSTGNVLRFVRASIELVYVNFEARIVAKCLERNGPRSMVKALLRYLDSDSDNIQDEALGEEGRQLSQEDSASFHPLDSNMSQDSSLSQQEDSAWDHPPPESTSIITEGSSSSPGGYKYDVYLSFRGADTRRSFIDYLNHRFLEEGISAFRDQVDLEIGEIISFQILRAINDSRISIVVFSRGYASSASCLDELVALVDCHKDGKVLFPIFYDVSPAEVRNQSGAYKDAFDSHMERFKENPDKIYKWKAAMTCLANLSGFNLTDKAKGEEIESIVQEVSGKLGYKFQRTRSIEKNPESIGRRLSLQEVNKYDVFLSFRCTQTSCTFIYYLRHYLTKKGFSTFMSFEEIQRGESFPSQVLQAIKDSRVLIVVFTRDYADSTSSLEEVATIVDCHRELKQTIIPVFLDVDRRDVQTQTGPYQKAFVSYTEEFEHDPLKVQRWRVALQHMTTLHGVRLEHESEIQAIGKIIQIVEGLCSKSSRLSSHNQVGIQSSSNKLEKLLKLKDDCVRVLGIWGMAGSGKTTRALALYDTIFQQFEAACFIMEVSQVYRVGGATAVQKQILRQTLNEELSDVYSPFEISGLVRKRLSWKQLLIVFDNVDELMHLKELAINPIMLGMGSRIIITTRNRQILDAYGVDVMYQIPLLNKDEARELFLSACCGISDRGCIELIPIVLEWAHGLPLAIEVLASVLQNADVTSWQCTLNRLREQHQQHQQSLIPLSGLSYRLRRKLVFEIMEPLQTSFESLDQEEREIFLHIACFFHGKKQDYVNEVLSCCGFFAEIGIQALLDKSLITIQNDQIHVHGLLQHLGKKIVQEEDPKDPGLRSRLWLFEDFSISLNSAMEGNKLKAIVLYEGTSSSKHEYLNIEGLSKMRNLELLILYDKHFSGILPSLPHRLRYLLWDGYPFISLPSFEPYNRLVQLNLPDSRIKHLWNGCKNFPSLERVNLSYSKELKETPDFGGSPRLKRLDFTGCTNLVQIHPSVGLLKELAYLSFRNCYRLSILDLDAGCNYETKPDFTGLGLTNLEHLDLGDCTSLSTVHYSIGNLNKLKFLNLHGCKNLVEKPDFSMFPRDGPEIAANPFSYRPLFNSFDRLVELNLPYSRKERLWDGKNFPSLQRVDLSYSKKLKETPDFGGSPRLKRLDLTGCTNLLRVHPSIGLLKELAYLSFGNCCRLVILDFGHECKLISLRVLDLYSCTNLMKTPDFTGLPNLEHLDLGGCTSLSIVHHSIGTLVKLKFLNVHGCINLPKLPDIINVAALHTSEVPVTNKKYDSLKIDYL 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151194g00004 1290 SUPERFAMILY Toll/Interleukin receptor TIR domain 325 467 IPR035897 -
Stsc151194g00004 1290 Gene3D - 658 741 IPR042197 -
Stsc151194g00004 1290 Gene3D Ribonuclease Inhibitor 858 1015 IPR032675 -
Stsc151194g00004 1290 MobiDBLite consensus disorder prediction 81 112 - -
Stsc151194g00004 1290 FunFam Disease resistance protein (TIR-NBS-LRR class) 131 298 - -
Stsc151194g00004 1290 Pfam TIR domain 133 299 IPR000157 GO:0007165
Stsc151194g00004 1290 Pfam TIR domain 325 482 IPR000157 GO:0007165
Stsc151194g00004 1290 SUPERFAMILY L domain-like 873 1078 - -
Stsc151194g00004 1290 ProSiteProfiles TIR domain profile. 324 490 IPR000157 GO:0007165
Stsc151194g00004 1290 Pfam NB-ARC domain 511 726 IPR002182 GO:0043531
Stsc151194g00004 1290 PRINTS Disease resistance protein signature 600 614 - -
Stsc151194g00004 1290 PRINTS Disease resistance protein signature 1057 1073 - -
Stsc151194g00004 1290 PRINTS Disease resistance protein signature 691 705 - -
Stsc151194g00004 1290 PRINTS Disease resistance protein signature 524 539 - -
Stsc151194g00004 1290 Gene3D - 130 302 IPR035897 -
Stsc151194g00004 1290 Gene3D - 321 491 IPR035897 -
Stsc151194g00004 1290 SMART till_3 133 272 IPR000157 GO:0007165
Stsc151194g00004 1290 SMART till_3 325 465 IPR000157 GO:0007165
Stsc151194g00004 1290 SUPERFAMILY Toll/Interleukin receptor TIR domain 125 275 IPR035897 -
Stsc151194g00004 1290 Gene3D Ribonuclease Inhibitor 1194 1276 IPR032675 -
Stsc151194g00004 1290 SUPERFAMILY "Winged helix" DNA-binding domain 748 848 IPR036390 -
Stsc151194g00004 1290 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1094 1186 IPR044974 GO:0006952
Stsc151194g00004 1290 Gene3D - 492 653 IPR027417 -
Stsc151194g00004 1290 ProSiteProfiles TIR domain profile. 132 297 IPR000157 GO:0007165
Stsc151194g00004 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 495 771 IPR027417 -
Stsc151194g00004 1290 SUPERFAMILY L domain-like 1094 1264 - -
Stsc151194g00004 1290 Gene3D Ribonuclease Inhibitor 1016 1190 IPR032675 -
Stsc151194g00004 1290 MobiDBLite consensus disorder prediction 76 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151194g00004 Stsc-Chr151194 44907 53246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151194g00004 134 293 WRKY Transcription Factor Family AT4G12020 29.193 1.42e-09 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151194g00004 - - ahf:112707224 1384.39