LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151194g00003	ATGGGGTCAAATGATCCAAGCCAGAAGCCGCGGGTTTGGAGACCCAAGTTTAAGGCTCTACTGTGTTGCAGTTGCTTGCAGTCTCCTTCTCCCATGGATTCCATGCTGCAAGATTCAGCTTGCAGTTCCACTCATCACCCAACGGATCCCAGCAGTTTCAGGCGGGTATACAAGCATGATGTGTTTCTGAGTTTCAGAGGCACCGATACCCGCAACAATTTCACCGATCATCTCTATCATAATCTCATCAGGAAAGGAGTTTTCGCCTTCAAGGACAACGAGAGGCTTCAGAAAGGGGAAGCTATCTCCTCCCAGCTTCTGCAAGCCATCAAAGATTCCCGGATTTCTATCATCGTCTTCTCAAGGGATTACGCTTCCTCCACATGGTGCCTCGATGAGATGGCTACCATTGCTCAATGCAAGAAAGAGTTCGGACAGAAGGTTTTCTCCGTTTTCTATGATGTGGATCCTTCTGATGTTCGAAAGCAGAGTGGGGTATACAAGGATGCTTTTGCTTTGCATACAGAAAGGTTTCAACAAGATCCTGCCAAGGTTGAACGCTGGAAGAGAGCTATGACACGGTTGGCCAATTCTGCTGGATGGGATGTTAGAGATAAGCCAGAATTCACAGAGATTGATAAAATCATTCGGAAGGTAATAAAAAAATTGGATCATAGATTTTCTGGGTCTGCTGATGATCTAGTAGGGATTCAACCATGTGTAAAAGAATTAGAACAAGTTCTAAAGATAAACCCAAAGGATGAAGAAGTTCAAGTTCTTGGAATTTGGGGAATGGGTGGAATAGGAAAGACAACTATTGCAAGTGTCTTGTATGACAAAATCTCTTATATGTTTGACGCACATTGCTTTATCGAGGATGTGAGCAGAATTTACAGAGATGGCAGTGCCATTGCCGTCCAAAGACAAATTCTCCGTCGAACTCTAGAGGAACAAGATCTGGATAAATATAGTCCTTCTGAAATAGCTGGCATAATCAGAAATAGGCTATCTTCCAAAGAGGTCCTCATAGTTCTTGATAATGTTGATGAAATCGAACAATTAGAGCAATTGGCTATTAATCCTAAATTACTTGGAAGAGGAAGCAGGATGATCATAACCACTAGGGATGAACATATTCTTAAAAGCTATGGAGTAGATGCAATTCACAAGGTTTCGTTATTGACTTCTAGTGATGCTTCGGAACTTTTTGCCAGAAAGGCCTTCAAAAGTGACCGACCTAGTAGCAGCACTTGTATGGAGTTGACTCCTATCATACTGGAATATGCTCAAGGTCTTCCATTAGCAATCAAAGTAGTGGGCTCTTTCTTGTATGATAGGAATGCTTCCCAATGGAGAGATTATTTAGAAAGACTGAAGAAATATCCAGACAAAAGAGTTACAAATGTTCTTCAAATAAGTTTTGACGCTTTGGAAAAAGAAGACAAAGAAATATTTTTGCACATTGCTTGTTTTTTCAGAGGGGAGAGGGAAGAGTATGTAAAGCGAATTCTAGATGTTTGTGGACTACACCCTCACATTGGAATTCAAGTTCTCAAGGAGAGATCACTCATAACCATTAAGAACCAAGAGTTTCATATGCATGACATAGTATGGCTTTATAGCGATTTTGAAAGTGCTTTGATGTCAGCTGAGATGGGAACAAACAATGTTAAAGCCATAGTCTTGGATCAGAAAAAGGAGATGTCCGAGTGCAGACAGTTGAGGATTGGTGGATTGTCTAAATTGAGGGATCTTAAACTGCTTATATTATACCACAAAAACTTTTCAGGAAGCCTTGATTTTCTTTCTCCAAATCTACAATATCTTGCTTGGCATGGCTATCCTTTCACTTCTTTGCCTTCGTTTCAACCTTATAGTAGGCTTGTTGAACTGAACCTGCCTTATAGCAATGTCAAACGACTATGGGAAGGCAACAAGAATATCCCACACTTGGAAAAGGTGGACTTGAGCCACTCAAAGGATCTCATAGAGACGCCAAGTTTTGAATGGAACCCAAACCTTAAGCGACTAGATTTTACAGGATGCACAAATCTGACGCACGTCCACCCTTCAATTGGAATCCTTAAGCAGCTTGCATACTTGAGTTTGCAAAACTGTAGCAGTTTGTTGAGCCTCAATCTTGGAGATGACTGTAATTTAAGTTCTCTGAGAGTTCTACGCCTTTCTGGCTGCACAAACCTTAAGAAGAGCCCAGATTTCACAGGGCTTTCAAATCTTGAGTATCTAGATCTTGAAAACTGTACAAGTTTACCCACAGTTCATGAATCTGTTGGTTCTCTTGCAATGTTAAAGTTCTTGAGTTTGAGAGGCTGTATTATTATTTATATGCCCACGGAAGTCAACAATATGGTATCTCTTCAAACCCTAGATTTAAGCCGCTGTCTACGACTGAGGTATCCCCTTGGACAGATTTCTATGTCTTCCTCTTACCTAGAATCTTTGATATGTCTGGACCTTGGCACATGCCATTTTATAGAAAATATTCCTGATTCTATTGGAGAGTTGAGCTGTTTAGAAAGATTAAACTTGGAGGAAAGTCAGTGTAGTCATTTACCTGATACCATCAAGCAGCTTTCCAGACTGGCATATTTGAATTTGGCAGATTGCTTATATCTTGAAAGATTGCCTGAGCTCCCATTTGATAGTGCGCCATCAGGGGGAAGGTATTTTCAAACGGTATCCGCATCTCATAACCATAGGTCAGGATTGTATGTTATAACCTACAATAAGGTTATGAAGAAAAACTTTAATTATATGCCAGCTGCGCTCTCATGGTTTGCTAGACTTGTTGAGCAACCCTGCCATTTCAGATGTGGGTTTGACATCATAATTCCTGAAAATGAGAGTAGCGGCATTCCAGGATGGTATTTCAATCATCAGTTTAAAGTGAGCACACGGAAGAATATTTTGATCTGCCTTCTTCAGTCGAAACCAACAGGGATATTGATGCAACACATGCTTGGATAA	2988	0.408	MGSNDPSQKPRVWRPKFKALLCCSCLQSPSPMDSMLQDSACSSTHHPTDPSSFRRVYKHDVFLSFRGTDTRNNFTDHLYHNLIRKGVFAFKDNERLQKGEAISSQLLQAIKDSRISIIVFSRDYASSTWCLDEMATIAQCKKEFGQKVFSVFYDVDPSDVRKQSGVYKDAFALHTERFQQDPAKVERWKRAMTRLANSAGWDVRDKPEFTEIDKIIRKVIKKLDHRFSGSADDLVGIQPCVKELEQVLKINPKDEEVQVLGIWGMGGIGKTTIASVLYDKISYMFDAHCFIEDVSRIYRDGSAIAVQRQILRRTLEEQDLDKYSPSEIAGIIRNRLSSKEVLIVLDNVDEIEQLEQLAINPKLLGRGSRMIITTRDEHILKSYGVDAIHKVSLLTSSDASELFARKAFKSDRPSSSTCMELTPIILEYAQGLPLAIKVVGSFLYDRNASQWRDYLERLKKYPDKRVTNVLQISFDALEKEDKEIFLHIACFFRGEREEYVKRILDVCGLHPHIGIQVLKERSLITIKNQEFHMHDIVWLYSDFESALMSAEMGTNNVKAIVLDQKKEMSECRQLRIGGLSKLRDLKLLILYHKNFSGSLDFLSPNLQYLAWHGYPFTSLPSFQPYSRLVELNLPYSNVKRLWEGNKNIPHLEKVDLSHSKDLIETPSFEWNPNLKRLDFTGCTNLTHVHPSIGILKQLAYLSLQNCSSLLSLNLGDDCNLSSLRVLRLSGCTNLKKSPDFTGLSNLEYLDLENCTSLPTVHESVGSLAMLKFLSLRGCIIIYMPTEVNNMVSLQTLDLSRCLRLRYPLGQISMSSSYLESLICLDLGTCHFIENIPDSIGELSCLERLNLEESQCSHLPDTIKQLSRLAYLNLADCLYLERLPELPFDSAPSGGRYFQTVSASHNHRSGLYVITYNKVMKKNFNYMPAALSWFARLVEQPCHFRCGFDIIIPENESSGIPGWYFNHQFKVSTRKNILICLLQSKPTGILMQHMLG	995

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151194g00003	995	Gene3D	-	28	196	IPR035897	-
	Stsc151194g00003	995	Gene3D	Ribonuclease Inhibitor	547	907	IPR032675	-
	Stsc151194g00003	995	Gene3D	-	204	389	IPR027417	-
	Stsc151194g00003	995	Gene3D	-	394	478	IPR042197	-
	Stsc151194g00003	995	SMART	till_3	58	198	IPR000157	GO:0007165
	Stsc151194g00003	995	FunFam	Disease resistance protein (TIR-NBS-LRR class)	55	225	-	-
	Stsc151194g00003	995	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	225	488	IPR027417	-
	Stsc151194g00003	995	Pfam	Leucine Rich Repeat	628	646	IPR011713	-
	Stsc151194g00003	995	SUPERFAMILY	"Winged helix" DNA-binding domain	465	537	IPR036390	-
	Stsc151194g00003	995	SUPERFAMILY	L domain-like	579	910	-	-
	Stsc151194g00003	995	PRINTS	Disease resistance protein signature	741	757	-	-
	Stsc151194g00003	995	PRINTS	Disease resistance protein signature	335	349	-	-
	Stsc151194g00003	995	PRINTS	Disease resistance protein signature	259	274	-	-
	Stsc151194g00003	995	PRINTS	Disease resistance protein signature	429	443	-	-
	Stsc151194g00003	995	Pfam	TIR domain	58	226	IPR000157	GO:0007165
	Stsc151194g00003	995	ProSiteProfiles	TIR domain profile.	57	223	IPR000157	GO:0007165
	Stsc151194g00003	995	SUPERFAMILY	Toll/Interleukin receptor TIR domain	51	201	IPR035897	-
	Stsc151194g00003	995	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	59	734	IPR044974	GO:0006952
	Stsc151194g00003	995	Pfam	NB-ARC domain	244	464	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151194g00003	Stsc-Chr151194	38869	44497	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151194g00003	719	884	WRKY Transcription Factor Family	AT4G12020	35.119	2.92e-15	79.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151194g00003	-		-	vvo:131643801	1020.38