LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151194g00002	ATGGGGTCAAATGATCCAAGCCAGAAGCCGCGGGTTTGGAGACCCAAGTTTAAGGCTCTACTGTGTTGCAGTTGCTTGCAGTCTCCTTCTCCCATGGATTCCATGCTGCAAGATTCAGCTTGCAGTTCCACTCATCACCCAACGGATCCCAGCAGTTTCAGGCGGGTATACAAGCATGATGTGTTTCTGAGTTTCAGAGGCACCGATACCCGCAACAATTTCACCGATCATCTCTATCATAATCTCATCAGGAAAGGAGTTTTCGCCTTCAAGGACAACGAGAGGCTTCAGAAAGGGGAAGCTATCTCCTCCCAGCTTCTGCAAGCCATCAAAGATTCCCGGATTTCTATCATCGTCTTCTCAAGGGATTACGCTTCCTCCACATGGTGCCTCGATGAGATGGCTACCATTGCTCAATGCAAGAAAGAGTTCGGACAGAAGGTTTTCTCCGTTTTCTATGATGTGGATCCTTCTGATGTTCGAAAGCAGAGTGGGGTATACAAGGATGCTTTTGCTTTGCATACAGAAAGGTTTCAACAAGATCCTGCCAAGGTTGAACGCTGGAAGAGAGCTATGACACGGTTGGCCAATTCTGCTGGATGGGATGTTAGAGATAAGCCAGAATTCACAGAGATTGATAAAATCATTCGGAAGGTAATAAAAAAATTGGATCATAGATTTTCTGGGTCTGCTGATGATCTAGTAGGGATTCAACCATGTGTAAAAGAATTAGAACAAGTTCTAAAGATAAACCCAAAGGATGAAGAAGTTCAAGTTCTTGGAATTTGGGGAATGGGTGGAATAGGAAAGACAACTATTGCAAGTGTCTTGTATGACAAAATCTCTTATATGTTTGACGCACATTGCTTTATCGAGGATGTGAGCAGAATTTACAGAGATGGCAGTGCCATTGCCGTCCAAAGACAAATTCTCCGTCGAACTCTAGAGGAACAAGATCTGGATAAATATAGTCCTTCTGAAATAGCTGGCATAATCAGAAATAGGCTATCTTCCAAAGAGGTCCTCATAGTTCTTGATAATGTTGATGAAATCGAACAATTAGAGCAATTGGCTATTAATCCTAAATTACTTGGAAGAGGAAGCAGGATGATCATAACCACTAGGGATGAACATATTCTTAAAAGCTATGGAGTAGATGCAATTCACAAGGTTTCGTTATTGACTTCTAGTGATGCTTCGGAACTTTTTGCCAGAAAGGCCTTCAAAAGTGACCGACCTAGTAGCAGCACTTGTATGGAGTTGACTCCTATCATACTGGAATATGCTCAAGGTCTTCCATTAGCAATCAAAGTAGTGGGCTCTTTCTTGTATGATAGGAATGCTTCCCAATGGAGAGATTATTTAGAAAGACTGAAGAAATATCCAGACAAAAGAGTTACAAATGTTCTTCAAATAAGTTTTGACGCTTTGGAAAAAGAAGACAAAGAAATATTTTTGCACATTGCTTGTTTTTTCAGAGGGGAGAGGGAAGAGTATGTAAAGCGAATTCTAGATGTTTGTGGACTACACCCTCACATTGGAATTCAAGTTCTCAAGGAGAGATCACTCATAACCATTAAGAACCAAGAGTTTCATATGCATGACATAGTATGGCTTTATAGCGATTTTGAAAGTGCTTTGATGTCAGCTGAGATGGGAACAAACAATGTTAAAGCCATAGTCTTGGATCAGAAAAAGGAGATGTCCGAGTGCAGACAGTTGAGGATTGGTGGATTGTCTAAATTGAGGGATCTTAAACTGCTTATATTATACCACAAAAACTTTTCAGGAAGCCTTGATTTTCTTTCTCCAAATCTACAATATCTTGCTTGGCATGGCTATCCTTTCACTTCTTTGCCTTCGTTTCAACCTTATAGTAGGCTTGTTGAACTGAACCTGCCTTATAGCAATGTCAAACGACTATGGGAAGGCAACAAGAATATCCCACACTTGGAAAAGGTGGACTTGAGCCACTCAAAGGATCTCATAGAGACGCCAAGTTTTGAATGGAACCCAAACCTTAAGCGACTAGATTTTACAGGATGCACAAATCTGACGCACGTCCACCCTTCAATTGGAATCCTTAAGCAGCTTGCATACTTGAGTTTGCAAAACTGTAGCAGTTTGTTGAGCCTCAATCTTGGAGATGACTGTAATTTAAGTTCTCTGAGAGTTCTACGCCTTTCTGGCTGCACAAACCTTAAGAAGAGCCCAGATTTCACAGGGCTTTCAAATCTTGAGTATCTAGATCTTGAAAACTGTACAAGTTTACCCACAGTTCATGAATCTGTTGGTTCTCTTGCAATGTTAAAGTTCTTGAGTTTGAGAGGCTGTATTATTATTTATATGCCCACGGAAGTCAACAATATGGTATCTCTTCAAACCCTAGATTTAAGCCGCTGTCTACGACTGAGGTATCCCCTTGGACAGATTTCTATGTCTTCCTCTTACCTAGAATCTTTGATATGTCTGGACCTTGGCACATGCCATTTTATAGAAAATATTCCTGATTCTATTGGAGAGTTGAGCTGTTTAGAAAGATTAAACTTGGAGGAAAGTCAGTGTAGTCATTTACCTGATACCATCAAGCAGCTTTCCAGACTGGCATATTTGAATTTGGCAGATTGCTTATATCTTGAAAGATTGCCTGAGCTCCCATTTGATAGTGCGCCATCAGGGGGAAGGTATTTTCAAACGGTATCCGCATCTCATAACCATAGGTCAGGATTGTATGTTATAACCTACAATAAGGTTATGAAGAAAAACTTTAATTATATGCCAGCTGCGCTCTCATGGTTTGCTAGACTTGTTGAGCAACCCTGCCATTTCAGATGTGGGTTTGACATCATAATTCCTGAAAATGAGAGTAGCGGCATTCCAGGATGGTATTTCAATCATCAGTTTAAAGGTGAGTCAACTGTAAGGGTAGTGGACTACGCTGATGTAGATGCCAACTGGCTTGGCTTTTCATTTTGTGTTACATTTCAGCATGTTAAACATGATTGTGATTCATCTGAGCTGCTGCGTCATTTTTATCTTTCTTTTGAAAGTGAGCACACGGAAGAATATTTTGATCTGCCTTCTTCAGTCGAAACCAACAGGGATATTGATGCAACACATGCTTGGATAATCTATATCTCTCGGGAGCATTGCCATTTTGTGAAAACAGGAGCCCCTATAAGATTTAAAGCCTGCAAGGGAATGAAGTTGCATGAATGGGGGTTTCGTATGGTGTTTAAACAAGATATAGAGAGACTGAAGAGGAGACTACAGAGAGGGGATAATAAAAAGCACAGTCCTATCTTTGATTCTTCCAGATTGGTCATTGAGTATGTGCATGAAGGCCAAAGTAGCAGCTCGGAGTCCAAGATCATGCTTCCATATAATTGGTTGGTTACCGACGAAGAAGAAATTGAGAAGATGGAGGCAAAGGCCAAAGAAGATAATCTCTCTAATTTGGGCCTTGTATAG	3471	0.4082	MGSNDPSQKPRVWRPKFKALLCCSCLQSPSPMDSMLQDSACSSTHHPTDPSSFRRVYKHDVFLSFRGTDTRNNFTDHLYHNLIRKGVFAFKDNERLQKGEAISSQLLQAIKDSRISIIVFSRDYASSTWCLDEMATIAQCKKEFGQKVFSVFYDVDPSDVRKQSGVYKDAFALHTERFQQDPAKVERWKRAMTRLANSAGWDVRDKPEFTEIDKIIRKVIKKLDHRFSGSADDLVGIQPCVKELEQVLKINPKDEEVQVLGIWGMGGIGKTTIASVLYDKISYMFDAHCFIEDVSRIYRDGSAIAVQRQILRRTLEEQDLDKYSPSEIAGIIRNRLSSKEVLIVLDNVDEIEQLEQLAINPKLLGRGSRMIITTRDEHILKSYGVDAIHKVSLLTSSDASELFARKAFKSDRPSSSTCMELTPIILEYAQGLPLAIKVVGSFLYDRNASQWRDYLERLKKYPDKRVTNVLQISFDALEKEDKEIFLHIACFFRGEREEYVKRILDVCGLHPHIGIQVLKERSLITIKNQEFHMHDIVWLYSDFESALMSAEMGTNNVKAIVLDQKKEMSECRQLRIGGLSKLRDLKLLILYHKNFSGSLDFLSPNLQYLAWHGYPFTSLPSFQPYSRLVELNLPYSNVKRLWEGNKNIPHLEKVDLSHSKDLIETPSFEWNPNLKRLDFTGCTNLTHVHPSIGILKQLAYLSLQNCSSLLSLNLGDDCNLSSLRVLRLSGCTNLKKSPDFTGLSNLEYLDLENCTSLPTVHESVGSLAMLKFLSLRGCIIIYMPTEVNNMVSLQTLDLSRCLRLRYPLGQISMSSSYLESLICLDLGTCHFIENIPDSIGELSCLERLNLEESQCSHLPDTIKQLSRLAYLNLADCLYLERLPELPFDSAPSGGRYFQTVSASHNHRSGLYVITYNKVMKKNFNYMPAALSWFARLVEQPCHFRCGFDIIIPENESSGIPGWYFNHQFKGESTVRVVDYADVDANWLGFSFCVTFQHVKHDCDSSELLRHFYLSFESEHTEEYFDLPSSVETNRDIDATHAWIIYISREHCHFVKTGAPIRFKACKGMKLHEWGFRMVFKQDIERLKRRLQRGDNKKHSPIFDSSRLVIEYVHEGQSSSSESKIMLPYNWLVTDEEEIEKMEAKAKEDNLSNLGLV	1156

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151194g00002	1156	Pfam	NB-ARC domain	244	464	IPR002182	GO:0043531
	Stsc151194g00002	1156	Gene3D	-	56	220	IPR035897	-
	Stsc151194g00002	1156	SUPERFAMILY	L domain-like	579	910	-	-
	Stsc151194g00002	1156	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	226	488	IPR027417	-
	Stsc151194g00002	1156	Pfam	Leucine Rich Repeat	628	646	IPR011713	-
	Stsc151194g00002	1156	SUPERFAMILY	Toll/Interleukin receptor TIR domain	51	201	IPR035897	-
	Stsc151194g00002	1156	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	59	711	IPR044974	GO:0006952
	Stsc151194g00002	1156	SMART	till_3	58	198	IPR000157	GO:0007165
	Stsc151194g00002	1156	FunFam	Disease resistance protein (TIR-NBS-LRR class)	55	225	-	-
	Stsc151194g00002	1156	Pfam	TIR domain	58	226	IPR000157	GO:0007165
	Stsc151194g00002	1156	Gene3D	-	394	478	IPR042197	-
	Stsc151194g00002	1156	Gene3D	Ribonuclease Inhibitor	547	907	IPR032675	-
	Stsc151194g00002	1156	SUPERFAMILY	"Winged helix" DNA-binding domain	465	537	IPR036390	-
	Stsc151194g00002	1156	PRINTS	Disease resistance protein signature	259	274	-	-
	Stsc151194g00002	1156	PRINTS	Disease resistance protein signature	335	349	-	-
	Stsc151194g00002	1156	PRINTS	Disease resistance protein signature	741	757	-	-
	Stsc151194g00002	1156	PRINTS	Disease resistance protein signature	429	443	-	-
	Stsc151194g00002	1156	Gene3D	-	221	388	IPR027417	-
	Stsc151194g00002	1156	ProSiteProfiles	TIR domain profile.	57	223	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151194g00002	Stsc-Chr151194	38869	44497	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151194g00002	719	884	WRKY Transcription Factor Family	AT4G12020	35.119	3.12e-15	79.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151194g00002	-		-	adu:107462392	1165.21